FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4371, 390 aa
  1>>>pF1KE4371 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5058+/-0.000724; mu= 12.9244+/- 0.043
 mean_var=123.4385+/-24.411, 0's: 0 Z-trim(113.9): 10  B-trim: 132 in 1/50
 Lambda= 0.115438
 statistics sampled from 14454 (14459) to 14454 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.444), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS10278.1 NEIL1 gene_id:79661|Hs108|chr15        ( 390) 2683 457.4 9.9e-129


>>CCDS10278.1 NEIL1 gene_id:79661|Hs108|chr15             (390 aa)
 initn: 2683 init1: 2683 opt: 2683  Z-score: 2424.6  bits: 457.4 E(32554): 9.9e-129
Smith-Waterman score: 2683; 99.7% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KE4 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GRGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR
              310       320       330       340       350       360

              370       380       390
pF1KE4 KGRQAASGHCRPRKVKADIPSLEPEGTSAS
       ::::::::::::::::::::::::::::::
CCDS10 KGRQAASGHCRPRKVKADIPSLEPEGTSAS
              370       380       390




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:00:54 2016 done: Sun Nov  6 02:00:55 2016
 Total Scan time:  3.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]