FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4360, 379 aa
  1>>>pF1KE4360 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6903+/-0.000723; mu= 16.0245+/- 0.044
 mean_var=84.9817+/-16.900, 0's: 0 Z-trim(111.2): 23  B-trim: 0 in 0/50
 Lambda= 0.139127
 statistics sampled from 12171 (12178) to 12171 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS6565.1 GALT gene_id:2592|Hs108|chr9            ( 379) 2663 543.9 8.7e-155
CCDS59122.1 GALT gene_id:2592|Hs108|chr9           ( 270) 1763 363.1 1.6e-100


>>CCDS6565.1 GALT gene_id:2592|Hs108|chr9                 (379 aa)
 initn: 2663 init1: 2663 opt: 2663  Z-score: 2892.4  bits: 543.9 E(32554): 8.7e-155
Smith-Waterman score: 2663; 99.7% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE4 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MSRSGTDPQQRQQASEADAAAATFRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGPSDHPLFQAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 HGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 HGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRA
              310       320       330       340       350       360

              370         
pF1KE4 LPEVHYHLGQKDRETATIA
       :::::::::::::::::::
CCDS65 LPEVHYHLGQKDRETATIA
              370         

>>CCDS59122.1 GALT gene_id:2592|Hs108|chr9                (270 aa)
 initn: 1763 init1: 1763 opt: 1763  Z-score: 1918.2  bits: 363.1 E(32554): 1.6e-100
Smith-Waterman score: 1763; 99.6% identity (100.0% similar) in 253 aa overlap (127-379:18-270)

        100       110       120       130       140       150      
pF1KE4 NDFPALQPDAPSPGPSDHPLFQAKSARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS
                                     ::::::::::::::::::::::::::::::
CCDS59              MTLSTLCVLGPSEPTESKVMCFHPWSDVTLPLMSVPEIRAVVDAWAS
                            10        20        30        40       

        160       170       180       190       200       210      
pF1KE4 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEP
        50        60        70        80        90       100       

        220       230       240       250       260       270      
pF1KE4 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLA
       110       120       130       140       150       160       

        280       290       300       310       320       330      
pF1KE4 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWDHWQLHAHYYPPLLRSATVRKFM
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS59 SIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFM
       170       180       190       200       210       220       

        340       350       360       370         
pF1KE4 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA
       :::::::::::::::::::::::::::::::::::::::::::
CCDS59 VGYEMLAQAQRDLTPEQAAERLRALPEVHYHLGQKDRETATIA
       230       240       250       260       270




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:07:44 2016 done: Sat Nov  5 23:07:45 2016
 Total Scan time:  2.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]