Result of FASTA (ccds) for
pFN21AE4352
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4352, 369 aa
1>>>pF1KE4352 369 - 369 aa - 369 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5148+/-0.000995; mu= 14.3064+/- 0.060
mean_var=55.0259+/-10.901, 0's: 0 Z-trim(102.4): 18 B-trim: 0 in 0/52
Lambda= 0.172898
statistics sampled from 6935 (6940) to 6935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.213), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS12276.1 DHPS gene_id:1725|Hs108|chr19 ( 369) 2437 616.3 1.3e-176
CCDS59354.1 DHPS gene_id:1725|Hs108|chr19 ( 327) 2001 507.5 6.5e-144
CCDS12277.1 DHPS gene_id:1725|Hs108|chr19 ( 322) 1727 439.2 2.4e-123
>>CCDS12276.1 DHPS gene_id:1725|Hs108|chr19 (369 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 3284.1 bits: 616.3 E(32554): 1.3e-176
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)
10 20 30 40 50 60
pF1KE4 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
310 320 330 340 350 360
pF1KE4 AFMHEKNED
:::::::::
CCDS12 AFMHEKNED
>>CCDS59354.1 DHPS gene_id:1725|Hs108|chr19 (327 aa)
initn: 2001 init1: 2001 opt: 2001 Z-score: 2697.2 bits: 507.5 E(32554): 6.5e-144
Smith-Waterman score: 2001; 100.0% identity (100.0% similar) in 301 aa overlap (69-369:27-327)
40 50 60 70 80 90
pF1KE4 GVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCT
::::::::::::::::::::::::::::::
CCDS59 MPIIPAFWEAEAGGSREEEFETSLANMIEKKLEPLSQDEDQHADLTQSRRPLTSCT
10 20 30 40 50
100 110 120 130 140 150
pF1KE4 IFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKEL
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE4 RENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPE
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE4 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGM
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE4 IILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVK
240 250 260 270 280 290
340 350 360
pF1KE4 VYADASLVFPLLVAETFAQKMDAFMHEKNED
:::::::::::::::::::::::::::::::
CCDS59 VYADASLVFPLLVAETFAQKMDAFMHEKNED
300 310 320
>>CCDS12277.1 DHPS gene_id:1725|Hs108|chr19 (322 aa)
initn: 1727 init1: 1727 opt: 1727 Z-score: 2328.0 bits: 439.2 E(32554): 2.4e-123
Smith-Waterman score: 2028; 87.3% identity (87.3% similar) in 369 aa overlap (1-369:1-322)
10 20 30 40 50 60
pF1KE4 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEGSLEREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 LGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGA
:::::::::::::::::::::
CCDS12 LGDMIFFHSYKNPGLVLDIVE---------------------------------------
250 260
310 320 330 340 350 360
pF1KE4 DYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 --------AQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAETFAQKMD
270 280 290 300 310
pF1KE4 AFMHEKNED
:::::::::
CCDS12 AFMHEKNED
320
369 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:07:15 2016 done: Sun Nov 6 02:07:15 2016
Total Scan time: 2.530 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]