FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4347, 363 aa
  1>>>pF1KE4347 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9503+/-0.000899; mu= -7.1850+/- 0.054
 mean_var=332.4747+/-67.738, 0's: 0 Z-trim(116.4): 9  B-trim: 0 in 0/55
 Lambda= 0.070339
 statistics sampled from 16987 (16994) to 16987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.522), width:  16
 Scan time:  3.660

The best scores are:                                      opt bits E(32554)
CCDS30791.1 PSRC1 gene_id:84722|Hs108|chr1         ( 310) 1439 158.9 5.3e-39
CCDS797.1 PSRC1 gene_id:84722|Hs108|chr1           ( 333) 1431 158.1 9.8e-39


>>CCDS30791.1 PSRC1 gene_id:84722|Hs108|chr1              (310 aa)
 initn: 1439 init1: 1439 opt: 1439  Z-score: 813.7  bits: 158.9 E(32554): 5.3e-39
Smith-Waterman score: 1441; 72.6% identity (80.1% similar) in 332 aa overlap (1-331:1-306)

               10        20        30        40        50        60
pF1KE4 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP
       :::::::::::::::::::::::::::::::::::::::::.              .:. 
CCDS30 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRAC-------------QPNA
              190       200       210       220                    

              250        260       270       280       290         
pF1KE4 PGPPTPIRSVLAPQPSTS-NSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPP
          :        :  . : ::.:  . .   ..:...    : .:   :    . ..   
CCDS30 THQPECATWQRCPTSGFSVNSKRASKTKHCRTQSAGKWTQGSCFPATKS----SCHGCHS
       230       240       250       260       270           280   

     300       310       320       330       340       350         
pF1KE4 GRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVP
        ..: : .:     : ::     ..:..::..                            
CCDS30 QQSAAPQES-----GSPRT----YQVKRSGQQARLQ                        
           290                300       310                        

     360   
pF1KE4 GPTR

>>CCDS797.1 PSRC1 gene_id:84722|Hs108|chr1                (333 aa)
 initn: 1421 init1: 1390 opt: 1431  Z-score: 808.9  bits: 158.1 E(32554): 9.8e-39
Smith-Waterman score: 2136; 91.7% identity (91.7% similar) in 363 aa overlap (1-363:1-333)

               10        20        30        40        50        60
pF1KE4 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 FPASKSPASSPLTRSTPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSP
       ::::::::::::::::::::::::::::::::                            
CCDS79 FPASKSPASSPLTRSTPPVRGRAGPSGRAAAS----------------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KE4 PGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 --PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTSRSVPPG
              220       230       240       250       260       270

              310       320       330       340       350       360
pF1KE4 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNLQPPRKVAVPG
              280       290       300       310       320       330

          
pF1KE4 PTR
       :::
CCDS79 PTR
          




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:09:36 2016 done: Sun Nov  6 02:09:37 2016
 Total Scan time:  3.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]