Result of FASTA (omim) for
pFN21AE4346
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4346, 361 aa
1>>>pF1KE4346 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1755+/-0.00038; mu= -3.0361+/- 0.024
mean_var=344.3563+/-71.673, 0's: 0 Z-trim(123.7): 4 B-trim: 1533 in 1/60
Lambda= 0.069115
statistics sampled from 44090 (44094) to 44090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.517), width: 16
Scan time: 7.380
The best scores are: opt bits E(85289)
NP_001122388 (OMIM: 608061) mitochondrial import r ( 361) 2439 256.3 7.8e-68
NP_006105 (OMIM: 608061) mitochondrial import rece ( 361) 2439 256.3 7.8e-68
NP_001122389 (OMIM: 608061) mitochondrial import r ( 361) 2439 256.3 7.8e-68
XP_005258468 (OMIM: 608061) PREDICTED: mitochondri ( 335) 2135 226.0 9.9e-59
>>NP_001122388 (OMIM: 608061) mitochondrial import recep (361 aa)
initn: 2439 init1: 2439 opt: 2439 Z-score: 1338.8 bits: 256.3 E(85289): 7.8e-68
Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
310 320 330 340 350 360
pF1KE4 G
:
NP_001 G
>>NP_006105 (OMIM: 608061) mitochondrial import receptor (361 aa)
initn: 2439 init1: 2439 opt: 2439 Z-score: 1338.8 bits: 256.3 E(85289): 7.8e-68
Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
310 320 330 340 350 360
pF1KE4 G
:
NP_006 G
>>NP_001122389 (OMIM: 608061) mitochondrial import recep (361 aa)
initn: 2439 init1: 2439 opt: 2439 Z-score: 1338.8 bits: 256.3 E(85289): 7.8e-68
Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
310 320 330 340 350 360
pF1KE4 G
:
NP_001 G
>>XP_005258468 (OMIM: 608061) PREDICTED: mitochondrial i (335 aa)
initn: 2307 init1: 2135 opt: 2135 Z-score: 1175.4 bits: 226.0 E(85289): 9.9e-59
Smith-Waterman score: 2135; 99.7% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
::::::::::::::::.
XP_005 FGYQLDLPKANLLFKGAGGQCAATLWASTLPGNTC
310 320 330
361 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:10:20 2016 done: Sun Nov 6 02:10:22 2016
Total Scan time: 7.380 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]