FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4346, 361 aa
  1>>>pF1KE4346 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8172+/-0.000997; mu= -0.6020+/- 0.061
 mean_var=328.3945+/-68.179, 0's: 0 Z-trim(115.8): 3  B-trim: 467 in 1/52
 Lambda= 0.070774
 statistics sampled from 16346 (16349) to 16346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.502), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19       ( 361) 2439 262.0 5.7e-70
CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1        ( 308) 1319 147.6 1.4e-35
CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1       ( 274)  890 103.7 1.9e-22


>>CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19            (361 aa)
 initn: 2439 init1: 2439 opt: 2439  Z-score: 1369.7  bits: 262.0 E(32554): 5.7e-70
Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI
              310       320       330       340       350       360

        
pF1KE4 G
       :
CCDS12 G
        

>>CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1             (308 aa)
 initn: 1340 init1: 1319 opt: 1319  Z-score: 752.5  bits: 147.6 E(32554): 1.4e-35
Smith-Waterman score: 1319; 64.6% identity (89.5% similar) in 285 aa overlap (77-361:24-308)

         50        60        70        80        90       100      
pF1KE4 GTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVN
                                     :::::.:.: :: ::..:: :::::::.::
CCDS12        MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVN
                      10        20        30        40        50   

        110       120       130       140       150       160      
pF1KE4 KGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIH
       : ::.:::: ::. .:..:  .::. ..:.:  ::::::.::..:::::.::::::::. 
CCDS12 KVLSSHFQVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLL
            60        70        80        90       100       110   

        170       180       190       200       210       220      
pF1KE4 QLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSIT
        :.  ::.: ..::::.::..:: ::::::.:.::..::::::..  : :.:::.:::.:
CCDS12 LLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLT
           120       130       140       150       160       170   

        230       240       250       260       270       280      
pF1KE4 PCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV
         :.:::::::::::::::....:::::.  .:.::...:..: ::.:::.:..:.::::
CCDS12 HRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGV
           180       190       200       210       220       230   

        290       300       310       320       330       340      
pF1KE4 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLN
       ::::.::.:::. ::::.: ::.::..:.: ::::: :::.::::.::::.:::::::::
CCDS12 EFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLN
           240       250       260       270       280       290   

        350       360 
pF1KE4 HRKNKFQCGFGLTIG
       : .:.:.:::..:.:
CCDS12 HWRNRFHCGFSITVG
           300        

>>CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1            (274 aa)
 initn: 1200 init1: 888 opt: 890  Z-score: 516.4  bits: 103.7 E(32554): 1.9e-22
Smith-Waterman score: 1115; 57.5% identity (79.3% similar) in 285 aa overlap (77-361:24-274)

         50        60        70        80        90       100      
pF1KE4 GTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVN
                                     :::::.:.: :: ::..:: :::::::.::
CCDS65        MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVN
                      10        20        30        40        50   

        110       120       130       140       150       160      
pF1KE4 KGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIH
       : ::.:::: ::. .:..:  .::. ..:.:  ::::::                     
CCDS65 KVLSSHFQVAHTIHMSALGLPGYHLHAAYAGDWQLSPTE---------------------
            60        70        80        90                       

        170       180       190       200       210       220      
pF1KE4 QLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSIT
                    :::.::..:: ::::::.:.::..::::::..  : :.:::.:::.:
CCDS65 -------------TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLT
                         100       110       120       130         

        230       240       250       260       270       280      
pF1KE4 PCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV
         :.:::::::::::::::....:::::.  .:.::...:..: ::.:::.:..:.::::
CCDS65 HRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGV
     140       150       160       170       180       190         

        290       300       310       320       330       340      
pF1KE4 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLN
       ::::.::.:::. ::::.: ::.::..:.: ::::: :::.::::.::::.:::::::::
CCDS65 EFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLN
     200       210       220       230       240       250         

        350       360 
pF1KE4 HRKNKFQCGFGLTIG
       : .:.:.:::..:.:
CCDS65 HWRNRFHCGFSITVG
     260       270    




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:10:20 2016 done: Sun Nov  6 02:10:20 2016
 Total Scan time:  3.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]