FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4340, 351 aa
  1>>>pF1KE4340 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2826+/-0.00102; mu= 15.7471+/- 0.061
 mean_var=54.4347+/-10.844, 0's: 0 Z-trim(102.0): 26  B-trim: 28 in 1/47
 Lambda= 0.173835
 statistics sampled from 6771 (6776) to 6771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.208), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS10838.1 ATP6V0D1 gene_id:9114|Hs108|chr16      ( 351) 2332 593.1 1.1e-169
CCDS6241.1 ATP6V0D2 gene_id:245972|Hs108|chr8      ( 350) 1625 415.8 2.7e-116


>>CCDS10838.1 ATP6V0D1 gene_id:9114|Hs108|chr16           (351 aa)
 initn: 2332 init1: 2332 opt: 2332  Z-score: 3159.7  bits: 593.1 E(32554): 1.1e-169
Smith-Waterman score: 2332; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
              310       320       330       340       350 

>>CCDS6241.1 ATP6V0D2 gene_id:245972|Hs108|chr8           (350 aa)
 initn: 1622 init1: 1304 opt: 1625  Z-score: 2201.4  bits: 415.8 E(32554): 2.7e-116
Smith-Waterman score: 1625; 68.2% identity (89.6% similar) in 346 aa overlap (6-351:6-350)

               10        20        30        40        50        60
pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
            :::::::.::::::::: ::..:.: ::.::::::::::::.:::.:::::::::
CCDS62 MLEGAELYFNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
       ...::::: :: ......  ::...:::. :::..:: ..: ::::::::::..:.:...
CCDS62 HTNPLTVSKIDTEMRKRLCGEFEYFRNHSLEPLSTFLTYMTCSYMIDNVILLMNGALQKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
       :. :.. :::::: : .:::::::.::..:.::::..:::: :::::.::. :::.:::.
CCDS62 SVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFFQDCMSENALDELNIEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
       .:: :::.:::.:::::   : .::..:::::::::::::::::.::::::::::::  :
CCDS62 LRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNSFGTELSKEDRETL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
       .:  :.::::::  ::.:.:..:.:::::.:  :: :::..:.. : ::::: :.:.::.
CCDS62 YPTFGKLYPEGLRLLAQAEDFDQMKNVADHYGVYKPLFEAVGGS-GGKTLEDVFYEREVQ
              250       260       270       280        290         

              310       320       330       340       350 
pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
       .: :::  :::.:::::.::::::: ::::::::::.::::.::..::::.
CCDS62 MNVLAFNRQFHYGVFYAYVKLKEQEIRNIVWIAECISQRHRTKINSYIPIL
     300       310       320       330       340       350




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:11:30 2016 done: Sun Nov  6 02:11:31 2016
 Total Scan time:  2.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]