Result of FASTA (omim) for
pFN21AE4335
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4335, 345 aa
1>>>pF1KE4335 345 - 345 aa - 345 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1649+/-0.000432; mu= 0.2204+/- 0.027
mean_var=297.7069+/-62.614, 0's: 0 Z-trim(121.3): 25 B-trim: 1936 in 2/54
Lambda= 0.074333
statistics sampled from 37675 (37701) to 37675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.442), width: 16
Scan time: 9.730
The best scores are: opt bits E(85289)
NP_110435 (OMIM: 607538) nuclear distribution prot ( 345) 2207 249.8 6.5e-66
XP_016880674 (OMIM: 607538) PREDICTED: nuclear dis ( 345) 2207 249.8 6.5e-66
XP_016880673 (OMIM: 607538) PREDICTED: nuclear dis ( 358) 2207 249.8 6.7e-66
XP_016880676 (OMIM: 607538) PREDICTED: nuclear dis ( 328) 2004 228.0 2.3e-59
NP_001020750 (OMIM: 607538) nuclear distribution p ( 328) 2004 228.0 2.3e-59
XP_016880675 (OMIM: 607538) PREDICTED: nuclear dis ( 341) 2004 228.0 2.3e-59
XP_016880672 (OMIM: 607538) PREDICTED: nuclear dis ( 390) 2005 228.2 2.4e-59
NP_001317058 (OMIM: 607538) nuclear distribution p ( 269) 1665 191.5 1.7e-48
XP_016880677 (OMIM: 607538) PREDICTED: nuclear dis ( 282) 1665 191.6 1.8e-48
XP_016878838 (OMIM: 605013,609449,614019) PREDICTE ( 346) 1167 138.3 2.4e-32
XP_016878845 (OMIM: 605013,609449,614019) PREDICTE ( 346) 1167 138.3 2.4e-32
XP_011520855 (OMIM: 605013,609449,614019) PREDICTE ( 347) 1153 136.8 6.9e-32
XP_005255453 (OMIM: 605013,609449,614019) PREDICTE ( 347) 1153 136.8 6.9e-32
XP_006720963 (OMIM: 605013,609449,614019) PREDICTE ( 347) 1153 136.8 6.9e-32
XP_006720960 (OMIM: 605013,609449,614019) PREDICTE ( 379) 1153 136.8 7.4e-32
XP_016878842 (OMIM: 605013,609449,614019) PREDICTE ( 319) 1135 134.8 2.5e-31
XP_016878839 (OMIM: 605013,609449,614019) PREDICTE ( 346) 1135 134.8 2.6e-31
NP_001137451 (OMIM: 605013,609449,614019) nuclear ( 335) 1133 134.6 3e-31
NP_060138 (OMIM: 605013,609449,614019) nuclear dis ( 335) 1133 134.6 3e-31
XP_016878844 (OMIM: 605013,609449,614019) PREDICTE ( 301) 1059 126.6 6.8e-29
XP_016878843 (OMIM: 605013,609449,614019) PREDICTE ( 319) 1049 125.6 1.5e-28
XP_016878840 (OMIM: 605013,609449,614019) PREDICTE ( 339) 1046 125.3 1.9e-28
XP_016878841 (OMIM: 605013,609449,614019) PREDICTE ( 339) 1046 125.3 1.9e-28
XP_016878846 (OMIM: 605013,609449,614019) PREDICTE ( 215) 618 79.2 9.4e-15
>>NP_110435 (OMIM: 607538) nuclear distribution protein (345 aa)
initn: 2207 init1: 2207 opt: 2207 Z-score: 1304.3 bits: 249.8 E(85289): 6.5e-66
Smith-Waterman score: 2207; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
250 260 270 280 290 300
310 320 330 340
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
::::::::::::::::::::: :::::::::::::::::::::::
NP_110 TKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV
310 320 330 340
>>XP_016880674 (OMIM: 607538) PREDICTED: nuclear distrib (345 aa)
initn: 2207 init1: 2207 opt: 2207 Z-score: 1304.3 bits: 249.8 E(85289): 6.5e-66
Smith-Waterman score: 2207; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
250 260 270 280 290 300
310 320 330 340
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
::::::::::::::::::::: :::::::::::::::::::::::
XP_016 TKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV
310 320 330 340
>>XP_016880673 (OMIM: 607538) PREDICTED: nuclear distrib (358 aa)
initn: 2207 init1: 2207 opt: 2207 Z-score: 1304.1 bits: 249.8 E(85289): 6.7e-66
Smith-Waterman score: 2207; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:14-358)
10 20 30 40
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYSLQNAAAFLIMDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 SGNVNCGVLNGNGTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 SGNVNCGVLNGNGTKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV
310 320 330 340 350
>>XP_016880676 (OMIM: 607538) PREDICTED: nuclear distrib (328 aa)
initn: 2004 init1: 2004 opt: 2004 Z-score: 1186.9 bits: 228.0 E(85289): 2.3e-59
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
250 260 270 280 290 300
310 320 330 340
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
:::::::::::::::
XP_016 TKFSRSGHTSFFDKGQEKVIFPTLFMGQ
310 320
>>NP_001020750 (OMIM: 607538) nuclear distribution prote (328 aa)
initn: 2004 init1: 2004 opt: 2004 Z-score: 1186.9 bits: 228.0 E(85289): 2.3e-59
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
250 260 270 280 290 300
310 320 330 340
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
:::::::::::::::
NP_001 TKFSRSGHTSFFDKGQEKVIFPTLFMGQ
310 320
>>XP_016880675 (OMIM: 607538) PREDICTED: nuclear distrib (341 aa)
initn: 2004 init1: 2004 opt: 2004 Z-score: 1186.7 bits: 228.0 E(85289): 2.3e-59
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:14-328)
10 20 30 40
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYSLQNAAAFLIMDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 SGNVNCGVLNGNGTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
::::::::::::::::::::::::::::
XP_016 SGNVNCGVLNGNGTKFSRSGHTSFFDKGQEKVIFPTLFMGQ
310 320 330 340
>>XP_016880672 (OMIM: 607538) PREDICTED: nuclear distrib (390 aa)
initn: 2049 init1: 2005 opt: 2005 Z-score: 1186.6 bits: 228.2 E(85289): 2.4e-59
Smith-Waterman score: 2005; 99.7% identity (100.0% similar) in 316 aa overlap (1-316:14-329)
10 20 30 40
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYSLQNAAAFLIMDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE4 SGNVNCGVLNGNGTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
::::::::::::::::::::::::::::.
XP_016 SGNVNCGVLNGNGTKFSRSGHTSFFDKGSRAMTPSQLRLLTVIVRYRRCGPREAGGALAP
310 320 330 340 350 360
>>NP_001317058 (OMIM: 607538) nuclear distribution prote (269 aa)
initn: 1665 init1: 1665 opt: 1665 Z-score: 991.5 bits: 191.5 E(85289): 1.7e-48
Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
::::::::::::::::::::::::
NP_001 TSPLTPSARISALNIVGDLLRKVGGSKRL
250 260
>>XP_016880677 (OMIM: 607538) PREDICTED: nuclear distrib (282 aa)
initn: 1665 init1: 1665 opt: 1665 Z-score: 991.3 bits: 191.6 E(85289): 1.8e-48
Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:14-277)
10 20 30 40
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYSLQNAAAFLIMDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSREL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTEN
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE4 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYI
:::::::::::::::::::::::::::::::::::::
XP_016 TFPSPKAIPNGFGTSPLTPSARISALNIVGDLLRKVGGSKRL
250 260 270 280
290 300 310 320 330 340
pF1KE4 SGNVNCGVLNGNGTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
>>XP_016878838 (OMIM: 605013,609449,614019) PREDICTED: n (346 aa)
initn: 1182 init1: 836 opt: 1167 Z-score: 701.5 bits: 138.3 E(85289): 2.4e-32
Smith-Waterman score: 1167; 57.1% identity (79.3% similar) in 343 aa overlap (9-343:8-344)
10 20 30 40 50 60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
::: .::. :::.:.. ::: .....:: :::::::: :::::.:: : :
XP_016 MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.:::::
XP_016 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
:::::::::::::.:::::::::::::::::::::::::::.:: :::::::::::::::
XP_016 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE
120 130 140 150 160 170
190 200 210 220 230
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSPKAIPNGF
:::...: : : ::: .. :. :.::::. :.:.::.. .: ... .: .. :.
XP_016 LAVQQKQ-EKPRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 ----GTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGV
: .::::.::::::::::::::::::::::::.:::.. ::. .. :. :
XP_016 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRT---GGPASGR
240 250 260 270 280 290
300 310 320 330 340
pF1KE4 LNGN---GTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
. : : . : . . ::: . .. . :: ..:: :: :.. .
XP_016 SSKNRDGGERRPSSTSVPLGDKGLGKRLEFGKPPSHMSSSPLPSAQGVVKMLL
300 310 320 330 340
345 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:13:52 2016 done: Sun Nov 6 02:13:53 2016
Total Scan time: 9.730 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]