FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4335, 345 aa
  1>>>pF1KE4335 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7235+/-0.000991; mu= 2.5422+/- 0.059
 mean_var=255.1597+/-51.970, 0's: 0 Z-trim(113.2): 18  B-trim: 111 in 1/53
 Lambda= 0.080291
 statistics sampled from 13866 (13873) to 13866 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.426), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17        ( 345) 2207 268.4 6.3e-72
CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17        ( 328) 2004 244.8 7.3e-65
CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17        ( 269) 1665 205.5 4.2e-53
CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16         ( 335) 1133 144.0 1.7e-34


>>CCDS11143.1 NDEL1 gene_id:81565|Hs108|chr17             (345 aa)
 initn: 2207 init1: 2207 opt: 2207  Z-score: 1404.8  bits: 268.4 E(32554): 6.3e-72
Smith-Waterman score: 2207; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
              250       260       270       280       290       300

              310       320       330       340     
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
       ::::::::::::::::::::: :::::::::::::::::::::::
CCDS11 TKFSRSGHTSFFDKGAVNGFDPAPPPPGLGSSRPSSAPGMLPLSV
              310       320       330       340     

>>CCDS32564.1 NDEL1 gene_id:81565|Hs108|chr17             (328 aa)
 initn: 2004 init1: 2004 opt: 2004  Z-score: 1278.0  bits: 244.8 E(32554): 7.3e-65
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
              250       260       270       280       290       300

              310       320       330       340     
pF1KE4 TKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
       :::::::::::::::                              
CCDS32 TKFSRSGHTSFFDKGQEKVIFPTLFMGQ                 
              310       320                         

>>CCDS82070.1 NDEL1 gene_id:81565|Hs108|chr17             (269 aa)
 initn: 1665 init1: 1665 opt: 1665  Z-score: 1066.8  bits: 205.5 E(32554): 4.2e-53
Smith-Waterman score: 1665; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNG
       ::::::::::::::::::::::::                                    
CCDS82 TSPLTPSARISALNIVGDLLRKVGGSKRL                               
              250       260                                        

>>CCDS10564.1 NDE1 gene_id:54820|Hs108|chr16              (335 aa)
 initn: 1160 init1: 836 opt: 1133  Z-score: 732.6  bits: 144.0 E(32554): 1.7e-34
Smith-Waterman score: 1133; 60.0% identity (81.3% similar) in 315 aa overlap (9-315:8-316)

               10        20        30        40        50        60
pF1KE4 MDGEDIPDFSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQ
               ::: .::. :::.:.. :::  .....:: :::::::: :::::.:: : : 
CCDS10  MEDSGKTFSSEEEEANYWKDLAMTYKQRAENTQEELREFQEGSREYEAELETQLQQIET
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ
       ::::: ..:.::..:.:..:::.: :....:.:.:.:::::.::.:::.::.::.:::::
CCDS10 RNRDLLSENNRLRMELETIKEKFEVQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQ
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE4 ANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE
       :::::::::::::.:::::::::::::::::::::::::::.:: :::::::::::::::
CCDS10 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQE
     120       130       140       150       160       170         

              190       200       210       220        230         
pF1KE4 LAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVG-KGTENTFPSPKAIPNGF
       :::...: :  :   :::  .. :. :.::::. :.:.::.. .:  ... .: ..  :.
CCDS10 LAVQQKQ-EKPRTPMPSS--VEAERTDTAVQATGSVPSTPIAHRGPSSSLNTPGSFRRGL
     180        190         200       210       220       230      

         240       250       260       270       280       290     
pF1KE4 ----GTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGV
           : .::::.::::::::::::::::::::::::.:::.. ::.  ..   :.   : 
CCDS10 DDSTGGTPLTPAARISALNIVGDLLRKVGALESKLASCRNLVYDQSPNRT---GGPASGR
        240       250       260       270       280          290   

            300       310       320       330       340     
pF1KE4 LNGN---GTKFSRSGHTSFFDKGAVNGFDTAPPPPGLGSSRPSSAPGMLPLSV
        . :   : .   :  . . :::                              
CCDS10 SSKNRDGGERRPSSTSVPLGDKGLDTSCRWLSKSTTRSSSSC           
           300       310       320       330                




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:13:51 2016 done: Sun Nov  6 02:13:51 2016
 Total Scan time:  3.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]