Result of FASTA (ccds) for
pFN21AE4334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4334, 344 aa
1>>>pF1KE4334 344 - 344 aa - 344 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4128+/-0.000934; mu= 11.9818+/- 0.056
mean_var=144.1781+/-27.442, 0's: 0 Z-trim(111.1): 73 B-trim: 0 in 0/52
Lambda= 0.106813
statistics sampled from 12019 (12091) to 12019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.371), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS3959.1 FST gene_id:10468|Hs108|chr5 ( 344) 2503 397.2 1e-110
CCDS43315.1 FST gene_id:10468|Hs108|chr5 ( 317) 2325 369.7 1.8e-102
CCDS12040.1 FSTL3 gene_id:10272|Hs108|chr19 ( 263) 817 137.3 1.4e-32
CCDS30551.1 AGRN gene_id:375790|Hs108|chr1 (2045) 428 78.3 6.3e-14
>>CCDS3959.1 FST gene_id:10468|Hs108|chr5 (344 aa)
initn: 2503 init1: 2503 opt: 2503 Z-score: 2101.1 bits: 397.2 E(32554): 1e-110
Smith-Waterman score: 2503; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)
10 20 30 40 50 60
pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA
250 260 270 280 290 300
310 320 330 340
pF1KE4 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW
::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW
310 320 330 340
>>CCDS43315.1 FST gene_id:10468|Hs108|chr5 (317 aa)
initn: 2325 init1: 2325 opt: 2325 Z-score: 1953.3 bits: 369.7 E(32554): 1.8e-102
Smith-Waterman score: 2325; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA
250 260 270 280 290 300
310 320 330 340
pF1KE4 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW
:::::::::::::::::
CCDS43 ACSSGVLLEVKHSGSCN
310
>>CCDS12040.1 FSTL3 gene_id:10272|Hs108|chr19 (263 aa)
initn: 693 init1: 373 opt: 817 Z-score: 698.4 bits: 137.3 E(32554): 1.4e-32
Smith-Waterman score: 817; 48.1% identity (77.1% similar) in 214 aa overlap (27-239:33-243)
10 20 30 40 50
pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECC
: .: :::.:.... :... .:.... :::
CCDS12 PGAPGPLWPLPWGALAWAVGFVSSMGSGNPAPGGVCWLQQGQEATCSLVLQTDVTRAECC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 STGRLSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRC
..: ..:.:.. : . . . : : . .:.:::..:..:.::::: ::: ..:::
CCDS12 ASGNIDTAWSNLTHPGNKI-NLLGFLGLV-HCLPCKDSCDGVECGPGKACRM-LGGRPRC
70 80 90 100 110
120 130 140 150 160 170
pF1KE4 VCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGS
::::::.. . ::: :: :::.:: : :::. .:.: :.:.:::.:.:. : ::
CCDS12 ECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 STCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAY
..::::::..:.::.: :: :.: : ::::..::: :.::.:.:::.::::::. .
CCDS12 QSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 EGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASEC
:.:
CCDS12 AGSCAGTPEEPPGGESAEEEENFV
240 250 260
>>CCDS30551.1 AGRN gene_id:375790|Hs108|chr1 (2045 aa)
initn: 419 init1: 172 opt: 428 Z-score: 363.5 bits: 78.3 E(32554): 6.3e-14
Smith-Waterman score: 461; 34.1% identity (59.5% similar) in 232 aa overlap (91-318:395-601)
70 80 90 100 110
pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCE-NVDCGPGKKCRMNKKNKPRCVCA
: : :. :. : ......::: :
CCDS30 ENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVC-------LSRRGRPRCSCD
370 380 390 400 410
120 130 140 150 160 170
pF1KE4 PDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKT---CRDVFCPGS
. ... :::. ::.:: ..: .:.:..: . ..:: : .. : : : .
CCDS30 RVTCDGAYR-PVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFG
420 430 440 450 460 470
180 190 200 210 220 230
pF1KE4 STCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYE
.::.: ....: : : . : .: . .::.:::::.:::.:. ..: ::: : .: .
CCDS30 ATCAV-KNGQAAC-ECLQAC---SSLYDPVCGSDGVTYGSACELEATACTLGREIQVARK
480 490 500 510 520 530
240 250 260 270 280 290
pF1KE4 GKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECA
: : . : :: : : .. ::: .: : .:::.::. :: :::
CCDS30 GPCDR---CG--QCRFGALC----EAETGRC-VCPSEC--VALAQPVCGSDGHTYPSECM
540 550 560 570
300 310 320 330 340
pF1KE4 MKEAACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW
.. ::. . :.: .: :..
CCDS30 LHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTY
580 590 600 610 620 630
>--
initn: 419 init1: 172 opt: 428 Z-score: 363.5 bits: 78.3 E(32554): 6.3e-14
Smith-Waterman score: 428; 29.4% identity (61.5% similar) in 231 aa overlap (93-316:170-389)
70 80 90 100 110 120
pF1KE4 TSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPR--CVCAP
..:... :: : :. : .. : :::
CCDS30 RITLRNLEEVEFCVEDKPGTHFTPVPPTPPDACRGMLCGFGAVCEPNAEGPGRASCVCKK
140 150 160 170 180 190
130 140 150 160 170
pF1KE4 D-CSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRC--KKTCRDVFCPGSS
. : ... .:::: :..:: ::: : .:.:..: .... .: : . : .: : .:
CCDS30 SPCPSVV--APVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGS
200 210 220 230 240 250
180 190 200 210 220 230
pF1KE4 TCVVDQTNNAYCVTCNRICPEP--ASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAY
::. .. .. ..: .:: .. : .::.::. : . :.: . .: ... .
CCDS30 TCA--RSADGLTASC--LCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKF
260 270 280 290 300 310
240 250 260 270 280 290
pF1KE4 EGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASEC
.: : :. ...: . .. : . : : :: .. :::..:..:: ..:
CCDS30 DGPC---DPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQA--PVCGDDGVTYENDC
320 330 340 350 360
300 310 320 330 340
pF1KE4 AMKEAACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW
.: ... . :.::. .::.:
CCDS30 VMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPV
370 380 390 400 410 420
344 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:14:25 2016 done: Sun Nov 6 02:14:26 2016
Total Scan time: 2.590 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]