Result of FASTA (omim) for
pFN21AE4330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4330, 338 aa
1>>>pF1KE4330 338 - 338 aa - 338 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7385+/-0.000385; mu= 13.7199+/- 0.024
mean_var=68.4519+/-13.974, 0's: 0 Z-trim(112.6): 15 B-trim: 19 in 1/49
Lambda= 0.155018
statistics sampled from 21528 (21535) to 21528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.252), width: 16
Scan time: 6.360
The best scores are: opt bits E(85289)
NP_006205 (OMIM: 266500,602026) phytanoyl-CoA diox ( 338) 2304 524.4 1.4e-148
NP_001310011 (OMIM: 266500,602026) phytanoyl-CoA d ( 340) 2290 521.2 1.2e-147
NP_001310009 (OMIM: 266500,602026) phytanoyl-CoA d ( 238) 1653 378.7 6.8e-105
NP_001032626 (OMIM: 266500,602026) phytanoyl-CoA d ( 238) 1653 378.7 6.8e-105
NP_001310013 (OMIM: 266500,602026) phytanoyl-CoA d ( 240) 1639 375.6 6e-104
NP_001310012 (OMIM: 266500,602026) phytanoyl-CoA d ( 250) 901 210.5 3e-54
>>NP_006205 (OMIM: 266500,602026) phytanoyl-CoA dioxygen (338 aa)
initn: 2304 init1: 2304 opt: 2304 Z-score: 2788.5 bits: 524.4 E(85289): 1.4e-148
Smith-Waterman score: 2304; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)
10 20 30 40 50 60
pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
250 260 270 280 290 300
310 320 330
pF1KE4 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::::::::::::
NP_006 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
310 320 330
>>NP_001310011 (OMIM: 266500,602026) phytanoyl-CoA dioxy (340 aa)
initn: 2290 init1: 1207 opt: 2290 Z-score: 2771.6 bits: 521.2 E(85289): 1.2e-147
Smith-Waterman score: 2290; 99.4% identity (99.4% similar) in 340 aa overlap (1-338:1-340)
10 20 30 40 50 60
pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSG--KKTSRHPLHQDL
:::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
NP_001 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGNCKKTSRHPLHQDL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 HYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 YEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQE
250 260 270 280 290 300
300 310 320 330
pF1KE4 NIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::::::::::::::
NP_001 NIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
310 320 330 340
>>NP_001310009 (OMIM: 266500,602026) phytanoyl-CoA dioxy (238 aa)
initn: 1653 init1: 1653 opt: 1653 Z-score: 2004.1 bits: 378.7 E(85289): 6.8e-105
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 238 aa overlap (101-338:1-238)
80 90 100 110 120 130
pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL
::::::::::::::::::::::::::::::
NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL
10 20 30
140 150 160 170 180 190
pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE4 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE4 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
160 170 180 190 200 210
320 330
pF1KE4 FFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::
NP_001 FFGAENSVNLKDIWMFRARLVKGERTNL
220 230
>>NP_001032626 (OMIM: 266500,602026) phytanoyl-CoA dioxy (238 aa)
initn: 1653 init1: 1653 opt: 1653 Z-score: 2004.1 bits: 378.7 E(85289): 6.8e-105
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 238 aa overlap (101-338:1-238)
80 90 100 110 120 130
pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL
::::::::::::::::::::::::::::::
NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL
10 20 30
140 150 160 170 180 190
pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE4 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE4 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
160 170 180 190 200 210
320 330
pF1KE4 FFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::
NP_001 FFGAENSVNLKDIWMFRARLVKGERTNL
220 230
>>NP_001310013 (OMIM: 266500,602026) phytanoyl-CoA dioxy (240 aa)
initn: 1639 init1: 1207 opt: 1639 Z-score: 1987.1 bits: 375.6 E(85289): 6e-104
Smith-Waterman score: 1639; 99.2% identity (99.2% similar) in 240 aa overlap (101-338:1-240)
80 90 100 110 120 130
pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL
::::::::::::::::::::::::::::::
NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL
10 20 30
140 150 160 170 180
pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSG--KKTSRHPLHQDLHYFPFRPSDL
:::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGNCKKTSRHPLHQDLHYFPFRPSDL
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE4 IVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE4 VMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIA
160 170 180 190 200 210
310 320 330
pF1KE4 HKFFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::::
NP_001 HKFFGAENSVNLKDIWMFRARLVKGERTNL
220 230 240
>>NP_001310012 (OMIM: 266500,602026) phytanoyl-CoA dioxy (250 aa)
initn: 901 init1: 901 opt: 901 Z-score: 1094.9 bits: 210.5 E(85289): 3e-54
Smith-Waterman score: 1475; 74.0% identity (74.0% similar) in 338 aa overlap (1-338:1-250)
10 20 30 40 50 60
pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
::::::::::::::::::
NP_001 VQDFQEDKELFRYCTLPE------------------------------------------
130
190 200 210 220 230 240
pF1KE4 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
::::::::::::::
NP_001 ----------------------------------------------GGVNKMFHGIQDYE
140 150
250 260 270 280 290 300
pF1KE4 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
160 170 180 190 200 210
310 320 330
pF1KE4 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
::::::::::::::::::::::::::::::::::::::
NP_001 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
220 230 240 250
338 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:08:57 2016 done: Sat Nov 5 23:08:58 2016
Total Scan time: 6.360 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]