Result of FASTA (omim) for
pFN21AE4328
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4328, 334 aa
1>>>pF1KE4328 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9672+/-0.000431; mu= 17.7017+/- 0.027
mean_var=60.2894+/-11.977, 0's: 0 Z-trim(110.1): 31 B-trim: 45 in 1/48
Lambda= 0.165179
statistics sampled from 18382 (18387) to 18382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.216), width: 16
Scan time: 7.270
The best scores are: opt bits E(85289)
NP_001625 (OMIM: 180980) S-adenosylmethionine deca ( 334) 2244 543.5 2.4e-154
NP_001274143 (OMIM: 180980) S-adenosylmethionine d ( 305) 1810 440.0 3e-123
NP_001274144 (OMIM: 180980) S-adenosylmethionine d ( 265) 1789 435.0 8.6e-122
NP_001274145 (OMIM: 180980) S-adenosylmethionine d ( 214) 1177 289.1 5.8e-78
>>NP_001625 (OMIM: 180980) S-adenosylmethionine decarbox (334 aa)
initn: 2244 init1: 2244 opt: 2244 Z-score: 2892.0 bits: 543.5 E(85289): 2.4e-154
Smith-Waterman score: 2244; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KE4 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
250 260 270 280 290 300
310 320 330
pF1KE4 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
::::::::::::::::::::::::::::::::::
NP_001 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
310 320 330
>>NP_001274143 (OMIM: 180980) S-adenosylmethionine decar (305 aa)
initn: 2044 init1: 1810 opt: 1810 Z-score: 2333.7 bits: 440.0 E(85289): 3e-123
Smith-Waterman score: 1990; 91.3% identity (91.3% similar) in 334 aa overlap (1-334:1-305)
10 20 30 40 50 60
pF1KE4 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
::::::::::::::::::::::::::::::::::::
NP_001 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIP------------------------
10 20 30
70 80 90 100 110 120
pF1KE4 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -----SESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
220 230 240 250 260 270
310 320 330
pF1KE4 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
::::::::::::::::::::::::::::::::::
NP_001 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
280 290 300
>>NP_001274144 (OMIM: 180980) S-adenosylmethionine decar (265 aa)
initn: 1789 init1: 1789 opt: 1789 Z-score: 2307.5 bits: 435.0 E(85289): 8.6e-122
Smith-Waterman score: 1789; 100.0% identity (100.0% similar) in 265 aa overlap (70-334:1-265)
40 50 60 70 80 90
pF1KE4 WDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLAR
::::::::::::::::::::::::::::::
NP_001 MFVSKRRFILKTCGTTLLLKALVPLLKLAR
10 20 30
100 110 120 130 140 150
pF1KE4 DYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE4 YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVID
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE4 ATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGK
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE4 FVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
220 230 240 250 260
>>NP_001274145 (OMIM: 180980) S-adenosylmethionine decar (214 aa)
initn: 1418 init1: 1177 opt: 1177 Z-score: 1520.7 bits: 289.1 E(85289): 5.8e-78
Smith-Waterman score: 1182; 64.1% identity (64.1% similar) in 334 aa overlap (1-334:1-214)
10 20 30 40 50 60
pF1KE4 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
:::::::::::::::::::::::::::::::::::::
NP_001 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPR-----------------------
10 20 30
70 80 90 100 110 120
pF1KE4 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
NP_001 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE4 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
:::::::::::::::::::::::
NP_001 -------------------------------------YLYTLDFPESRVISQPDQTLEIL
40 50 60
190 200 210 220 230 240
pF1KE4 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE4 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
130 140 150 160 170 180
310 320 330
pF1KE4 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
::::::::::::::::::::::::::::::::::
NP_001 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
190 200 210
334 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:16:59 2016 done: Sun Nov 6 02:17:00 2016
Total Scan time: 7.270 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]