Result of FASTA (ccds) for
pFN21AE4327
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4327, 332 aa
1>>>pF1KE4327 332 - 332 aa - 332 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7031+/-0.000699; mu= 20.1683+/- 0.042
mean_var=77.6441+/-15.041, 0's: 0 Z-trim(111.2): 18 B-trim: 0 in 0/50
Lambda= 0.145553
statistics sampled from 12175 (12183) to 12175 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.374), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS59180.1 IL9R gene_id:3581|Hs108|chrX ( 342) 2406 514.3 5.7e-146
CCDS59180.1 IL9R gene_id:3581|Hs108|chrY ( 342) 2406 514.3 5.7e-146
CCDS14771.4 IL9R gene_id:3581|Hs108|chrX ( 521) 994 218.0 1.4e-56
CCDS14771.4 IL9R gene_id:3581|Hs108|chrY ( 521) 994 218.0 1.4e-56
>>CCDS59180.1 IL9R gene_id:3581|Hs108|chrX (342 aa)
initn: 2406 init1: 2406 opt: 2406 Z-score: 2734.1 bits: 514.3 E(32554): 5.7e-146
Smith-Waterman score: 2406; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:11-342)
10 20 30 40 50
pF1KE4 MHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MPQTCDGTGQMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 ESEALRRDMGTWLLACICICTCVCLGVSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESEALRRDMGTWLLACICICTCVCLGVSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPEL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 GQGSSPWLLFTRLLAAHISASCGAVSAPSCCHLRQCSCHLTISPSLSTTACLGGSRSAWW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GQGSSPWLLFTRLLAAHISASCGAVSAPSCCHLRQCSCHLTISPSLSTTACLGGSRSAWW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 TRSTCPGDTSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TRSTCPGDTSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 WLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIP
250 260 270 280 290 300
300 310 320 330
pF1KE4 PWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRLGWGPTGPVCC
::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRLGWGPTGPVCC
310 320 330 340
>>CCDS59180.1 IL9R gene_id:3581|Hs108|chrY (342 aa)
initn: 2406 init1: 2406 opt: 2406 Z-score: 2734.1 bits: 514.3 E(32554): 5.7e-146
Smith-Waterman score: 2406; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:11-342)
10 20 30 40 50
pF1KE4 MHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MPQTCDGTGQMHLGSNCCKNGQTLLQRTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 ESEALRRDMGTWLLACICICTCVCLGVSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESEALRRDMGTWLLACICICTCVCLGVSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPEL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 GQGSSPWLLFTRLLAAHISASCGAVSAPSCCHLRQCSCHLTISPSLSTTACLGGSRSAWW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GQGSSPWLLFTRLLAAHISASCGAVSAPSCCHLRQCSCHLTISPSLSTTACLGGSRSAWW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 TRSTCPGDTSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TRSTCPGDTSNISSGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 WLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WLILEAFELDPGFIHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIP
250 260 270 280 290 300
300 310 320 330
pF1KE4 PWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRLGWGPTGPVCC
::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWGWPGNTLVAVSIFLLLTGPTYLLFKLSPRLGWGPTGPVCC
310 320 330 340
>>CCDS14771.4 IL9R gene_id:3581|Hs108|chrX (521 aa)
initn: 1526 init1: 989 opt: 994 Z-score: 1129.4 bits: 218.0 E(32554): 1.4e-56
Smith-Waterman score: 1512; 78.9% identity (84.8% similar) in 289 aa overlap (47-322:10-297)
20 30 40 50 60 70
pF1KE4 RTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTLESEALRRDMGTWLLACICICTCVCLG
::::::::::::::::::::::::::::::
CCDS14 MGLGRCIWEGWTLESEALRRDMGTWLLACICICTCVCLG
10 20 30
80 90 100 110 120 130
pF1KE4 VSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTRLLAAHISASCGAVS
::::::::::::::::::::::::::::::::::::::::::::: : . .: .
CCDS14 VSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTSNQAPGGTHKC-ILR
40 50 60 70 80 90
140 150 160 170 180
pF1KE4 APSCCHLRQCSCHLTISPSLSTT--ACLGGSRSA------WWTRSTC----PGDT-SNIS
. : . :. : ... : :..: ... . : :.: ::::
CCDS14 GSECTVVLPPEAVLVPSDNFTITFHHCMSGREQVSLVDPEYLPRRHVKLDPPSDLQSNIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 SGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 IHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVS
220 230 240 250 260 270
310 320 330
pF1KE4 IFLLLTGPTYLLFKLSPRLGWGPTGPVCC
::::::::::::::::::.
CCDS14 IFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQTWMGAHGAGVLLSQ
280 290 300 310 320 330
>>CCDS14771.4 IL9R gene_id:3581|Hs108|chrY (521 aa)
initn: 1526 init1: 989 opt: 994 Z-score: 1129.4 bits: 218.0 E(32554): 1.4e-56
Smith-Waterman score: 1512; 78.9% identity (84.8% similar) in 289 aa overlap (47-322:10-297)
20 30 40 50 60 70
pF1KE4 RTCHGVSCCGWWFQAARSILGKGPSAQSLAGWTLESEALRRDMGTWLLACICICTCVCLG
::::::::::::::::::::::::::::::
CCDS14 MGLGRCIWEGWTLESEALRRDMGTWLLACICICTCVCLG
10 20 30
80 90 100 110 120 130
pF1KE4 VSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTRLLAAHISASCGAVS
::::::::::::::::::::::::::::::::::::::::::::: : . .: .
CCDS14 VSVTGEGQGPRSRTFTCLTNNILRIDCHWSAPELGQGSSPWLLFTSNQAPGGTHKC-ILR
40 50 60 70 80 90
140 150 160 170 180
pF1KE4 APSCCHLRQCSCHLTISPSLSTT--ACLGGSRSA------WWTRSTC----PGDT-SNIS
. : . :. : ... : :..: ... . : :.: ::::
CCDS14 GSECTVVLPPEAVLVPSDNFTITFHHCMSGREQVSLVDPEYLPRRHVKLDPPSDLQSNIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 SGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGHCILTWSISPALEPMTTLLSYELAFKKQEEAWEQAQHRDHIVGVTWLILEAFELDPGF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 IHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IHEARLRVQMATLEDDVVEEERYTGQWSEWSQPVCFQAPQRQGPLIPPWGWPGNTLVAVS
220 230 240 250 260 270
310 320 330
pF1KE4 IFLLLTGPTYLLFKLSPRLGWGPTGPVCC
::::::::::::::::::.
CCDS14 IFLLLTGPTYLLFKLSPRVKRIFYQNVPSPAMFFQPLYSVHNGNFQTWMGAHGAGVLLSQ
280 290 300 310 320 330
332 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:08:22 2016 done: Sat Nov 5 23:08:23 2016
Total Scan time: 2.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]