FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4323, 326 aa
  1>>>pF1KE4323 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4948+/-0.000833; mu= -4.5948+/- 0.051
 mean_var=334.4004+/-67.327, 0's: 0 Z-trim(118.6): 9  B-trim: 0 in 0/54
 Lambda= 0.070136
 statistics sampled from 19539 (19547) to 19539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.6), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS12534.2 ZFP36 gene_id:7538|Hs108|chr19         ( 332) 2313 246.6   2e-65


>>CCDS12534.2 ZFP36 gene_id:7538|Hs108|chr19              (332 aa)
 initn: 2313 init1: 2313 opt: 2313  Z-score: 1288.0  bits: 246.6 E(32554): 2e-65
Smith-Waterman score: 2313; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:7-332)

                     10        20        30        40        50    
pF1KE4       MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRL
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MANRYTMDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRL
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE4 PGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSE
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KE4 SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAA
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KE4 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KE4 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS
              250       260       270       280       290       300

          300       310       320      
pF1KE4 DSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE
       ::::::::::::::::::::::::::::::::
CCDS12 DSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE
              310       320       330  




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:44:33 2016 done: Thu Nov  3 06:44:34 2016
 Total Scan time:  3.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]