Result of FASTA (omim) for
pFN21AE4318
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4318, 324 aa
1>>>pF1KE4318 324 - 324 aa - 324 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4026+/-0.000299; mu= 11.6389+/- 0.019
mean_var=97.8238+/-19.672, 0's: 0 Z-trim(118.3): 20 B-trim: 0 in 0/54
Lambda= 0.129674
statistics sampled from 31005 (31025) to 31005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.364), width: 16
Scan time: 8.630
The best scores are: opt bits E(85289)
NP_872577 (OMIM: 203300,604982) Hermansky-Pudlak s ( 324) 2129 408.2 1.2e-113
NP_000186 (OMIM: 203300,604982) Hermansky-Pudlak s ( 700) 2058 395.1 2.3e-109
XP_005269814 (OMIM: 203300,604982) PREDICTED: Herm ( 700) 2058 395.1 2.3e-109
NP_001309405 (OMIM: 203300,604982) Hermansky-Pudla ( 700) 2058 395.1 2.3e-109
NP_001309406 (OMIM: 203300,604982) Hermansky-Pudla ( 700) 2058 395.1 2.3e-109
NP_001309420 (OMIM: 203300,604982) Hermansky-Pudla ( 291) 1667 321.7 1.2e-87
NP_001309407 (OMIM: 203300,604982) Hermansky-Pudla ( 667) 1665 321.5 3e-87
NP_001309408 (OMIM: 203300,604982) Hermansky-Pudla ( 667) 1665 321.5 3e-87
NP_001309412 (OMIM: 203300,604982) Hermansky-Pudla ( 577) 1209 236.2 1.3e-61
NP_001309413 (OMIM: 203300,604982) Hermansky-Pudla ( 577) 1209 236.2 1.3e-61
NP_001309421 (OMIM: 203300,604982) Hermansky-Pudla ( 275) 1121 219.5 6.2e-57
XP_016871662 (OMIM: 203300,604982) PREDICTED: Herm ( 275) 1121 219.5 6.2e-57
NP_001309419 (OMIM: 203300,604982) Hermansky-Pudla ( 308) 1110 217.5 2.8e-56
NP_001309414 (OMIM: 203300,604982) Hermansky-Pudla ( 544) 816 162.7 1.6e-39
XP_016871660 (OMIM: 203300,604982) PREDICTED: Herm ( 544) 816 162.7 1.6e-39
NP_001309409 (OMIM: 203300,604982) Hermansky-Pudla ( 613) 606 123.4 1.2e-27
NP_001309410 (OMIM: 203300,604982) Hermansky-Pudla ( 613) 606 123.4 1.2e-27
XP_016871659 (OMIM: 203300,604982) PREDICTED: Herm ( 580) 528 108.8 2.9e-23
NP_001309411 (OMIM: 203300,604982) Hermansky-Pudla ( 580) 528 108.8 2.9e-23
>>NP_872577 (OMIM: 203300,604982) Hermansky-Pudlak syndr (324 aa)
initn: 2129 init1: 2129 opt: 2129 Z-score: 2161.2 bits: 408.2 E(85289): 1.2e-113
Smith-Waterman score: 2129; 99.7% identity (99.7% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
250 260 270 280 290 300
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::::::::::::::
NP_872 FTPAPSPGDQSSGEDRRKAGGNNS
310 320
>>NP_000186 (OMIM: 203300,604982) Hermansky-Pudlak syndr (700 aa)
initn: 2058 init1: 2058 opt: 2058 Z-score: 2084.5 bits: 395.1 E(85289): 2.3e-109
Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
250 260 270 280 290 300
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
NP_000 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
310 320 330 340 350 360
>>XP_005269814 (OMIM: 203300,604982) PREDICTED: Hermansk (700 aa)
initn: 2058 init1: 2058 opt: 2058 Z-score: 2084.5 bits: 395.1 E(85289): 2.3e-109
Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
250 260 270 280 290 300
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
XP_005 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
310 320 330 340 350 360
>>NP_001309405 (OMIM: 203300,604982) Hermansky-Pudlak sy (700 aa)
initn: 2058 init1: 2058 opt: 2058 Z-score: 2084.5 bits: 395.1 E(85289): 2.3e-109
Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
250 260 270 280 290 300
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
NP_001 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
310 320 330 340 350 360
>>NP_001309406 (OMIM: 203300,604982) Hermansky-Pudlak sy (700 aa)
initn: 2058 init1: 2058 opt: 2058 Z-score: 2084.5 bits: 395.1 E(85289): 2.3e-109
Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
250 260 270 280 290 300
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
NP_001 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
310 320 330 340 350 360
>>NP_001309420 (OMIM: 203300,604982) Hermansky-Pudlak sy (291 aa)
initn: 1685 init1: 1661 opt: 1667 Z-score: 1694.8 bits: 321.7 E(85289): 1.2e-87
Smith-Waterman score: 1824; 89.5% identity (89.5% similar) in 324 aa overlap (1-324:1-291)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
:::::::::::::::: :::::::::::
NP_001 VQDLYPSESTAEDDIQ---------------------------------ETDSFSLPEEY
250 260
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::::::::::::::
NP_001 FTPAPSPGDQSSGEDRRKAGGNNS
270 280 290
>>NP_001309407 (OMIM: 203300,604982) Hermansky-Pudlak sy (667 aa)
initn: 1662 init1: 1662 opt: 1665 Z-score: 1687.4 bits: 321.5 E(85289): 3e-87
Smith-Waterman score: 1753; 87.5% identity (87.5% similar) in 321 aa overlap (1-321:1-288)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
:::::::::::::::: :::::::::::
NP_001 VQDLYPSESTAEDDIQ---------------------------------ETDSFSLPEEY
250 260
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
NP_001 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
270 280 290 300 310 320
>>NP_001309408 (OMIM: 203300,604982) Hermansky-Pudlak sy (667 aa)
initn: 1662 init1: 1662 opt: 1665 Z-score: 1687.4 bits: 321.5 E(85289): 3e-87
Smith-Waterman score: 1753; 87.5% identity (87.5% similar) in 321 aa overlap (1-321:1-288)
10 20 30 40 50 60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
:::::::::::::::: :::::::::::
NP_001 VQDLYPSESTAEDDIQ---------------------------------ETDSFSLPEEY
250 260
310 320
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
::::::::::::: ::
NP_001 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
270 280 290 300 310 320
>>NP_001309412 (OMIM: 203300,604982) Hermansky-Pudlak sy (577 aa)
initn: 1209 init1: 1209 opt: 1209 Z-score: 1227.3 bits: 236.2 E(85289): 1.3e-61
Smith-Waterman score: 1209; 96.8% identity (96.8% similar) in 188 aa overlap (134-321:11-198)
110 120 130 140 150 160
pF1KE4 DLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQE
::::::::::::::::::::::::::::::
NP_001 MATSCMSFTWLRPPDLAQRVQLWEHFQSLLWTYSRLREQE
10 20 30 40
170 180 190 200 210 220
pF1KE4 QCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSS
50 60 70 80 90 100
230 240 250 260 270 280
pF1KE4 HSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTG
110 120 130 140 150 160
290 300 310 320
pF1KE4 GSSAETETDSFSLPEEYFTPAPSPGDQSSGEDRRKAGGNNS
:::::::::::::::::::::::::::::: ::
NP_001 GSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCP
170 180 190 200 210 220
NP_001 VPSGPRRIFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFS
230 240 250 260 270 280
>>NP_001309413 (OMIM: 203300,604982) Hermansky-Pudlak sy (577 aa)
initn: 1209 init1: 1209 opt: 1209 Z-score: 1227.3 bits: 236.2 E(85289): 1.3e-61
Smith-Waterman score: 1209; 96.8% identity (96.8% similar) in 188 aa overlap (134-321:11-198)
110 120 130 140 150 160
pF1KE4 DLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQE
::::::::::::::::::::::::::::::
NP_001 MATSCMSFTWLRPPDLAQRVQLWEHFQSLLWTYSRLREQE
10 20 30 40
170 180 190 200 210 220
pF1KE4 QCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSS
50 60 70 80 90 100
230 240 250 260 270 280
pF1KE4 HSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTG
110 120 130 140 150 160
290 300 310 320
pF1KE4 GSSAETETDSFSLPEEYFTPAPSPGDQSSGEDRRKAGGNNS
:::::::::::::::::::::::::::::: ::
NP_001 GSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCP
170 180 190 200 210 220
NP_001 VPSGPRRIFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFS
230 240 250 260 270 280
324 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:12:26 2016 done: Sat Nov 5 23:12:27 2016
Total Scan time: 8.630 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]