FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4318, 324 aa
  1>>>pF1KE4318 324 - 324 aa - 324 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4902+/-0.000729; mu= 11.1287+/- 0.044
 mean_var=92.7145+/-18.457, 0's: 0 Z-trim(110.7): 8  B-trim: 0 in 0/53
 Lambda= 0.133199
 statistics sampled from 11829 (11832) to 11829 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS7476.1 HPS1 gene_id:3257|Hs108|chr10           ( 324) 2129 418.7  3e-117
CCDS7475.1 HPS1 gene_id:3257|Hs108|chr10           ( 700) 2058 405.3 7.5e-113


>>CCDS7476.1 HPS1 gene_id:3257|Hs108|chr10                (324 aa)
 initn: 2129 init1: 2129 opt: 2129  Z-score: 2218.4  bits: 418.7 E(32554): 3e-117
Smith-Waterman score: 2129; 99.7% identity (99.7% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
              250       260       270       280       290       300

              310       320    
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS
       ::::::::::::::::::::::::
CCDS74 FTPAPSPGDQSSGEDRRKAGGNNS
              310       320    

>>CCDS7475.1 HPS1 gene_id:3257|Hs108|chr10                (700 aa)
 initn: 2058 init1: 2058 opt: 2058  Z-score: 2139.5  bits: 405.3 E(32554): 7.5e-113
Smith-Waterman score: 2058; 97.8% identity (97.8% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KE4 MKGVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
              250       260       270       280       290       300

              310       320                                        
pF1KE4 FTPAPSPGDQSSGEDRRKAGGNNS                                    
       :::::::::::::      ::                                       
CCDS74 FTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKES
              310       320       330       340       350       360




324 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:12:25 2016 done: Sat Nov  5 23:12:25 2016
 Total Scan time:  2.970 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]