Result of FASTA (omim) for
pFN21AE4309
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4309, 318 aa
1>>>pF1KE4309 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9298+/-0.000394; mu= 17.4363+/- 0.025
mean_var=54.9445+/-11.328, 0's: 0 Z-trim(110.1): 24 B-trim: 72 in 1/49
Lambda= 0.173026
statistics sampled from 18418 (18437) to 18418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.216), width: 16
Scan time: 7.160
The best scores are: opt bits E(85289)
NP_000223 (OMIM: 600900,604286) beta-sarcoglycan [ ( 318) 2076 526.4 2.9e-149
XP_005266562 (OMIM: 253700,608896) PREDICTED: gamm ( 291) 210 60.6 4.4e-09
XP_006719924 (OMIM: 253700,608896) PREDICTED: gamm ( 309) 210 60.6 4.7e-09
NP_000222 (OMIM: 253700,608896) gamma-sarcoglycan ( 291) 208 60.1 6.3e-09
NP_001121681 (OMIM: 601287,601411,606685) delta-sa ( 289) 198 57.6 3.5e-08
XP_011532923 (OMIM: 601287,601411,606685) PREDICTE ( 289) 198 57.6 3.5e-08
XP_016865213 (OMIM: 601287,601411,606685) PREDICTE ( 290) 198 57.6 3.5e-08
XP_005266023 (OMIM: 601287,601411,606685) PREDICTE ( 290) 198 57.6 3.5e-08
NP_000328 (OMIM: 601287,601411,606685) delta-sarco ( 290) 198 57.6 3.5e-08
XP_016865212 (OMIM: 601287,601411,606685) PREDICTE ( 290) 198 57.6 3.5e-08
>>NP_000223 (OMIM: 600900,604286) beta-sarcoglycan [Homo (318 aa)
initn: 2076 init1: 2076 opt: 2076 Z-score: 2800.8 bits: 526.4 E(85289): 2.9e-149
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KE4 MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV
250 260 270 280 290 300
310
pF1KE4 TSQNMGCQISDNPCGNTH
::::::::::::::::::
NP_000 TSQNMGCQISDNPCGNTH
310
>>XP_005266562 (OMIM: 253700,608896) PREDICTED: gamma-sa (291 aa)
initn: 64 init1: 45 opt: 210 Z-score: 284.0 bits: 60.6 E(85289): 4.4e-09
Smith-Waterman score: 210; 23.6% identity (58.5% similar) in 284 aa overlap (48-314:19-290)
20 30 40 50 60 70
pF1KE4 VKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRG-RKGNLAICVIILLFILA
... ..: :. : :: : . :..::.::
XP_005 MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIIL-
10 20 30 40
80 90 100 110 120 130
pF1KE4 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLV
:.:: .:. : :. ..: : . ..:: :.. :.. . ::: . . .: . .:.
XP_005 VVNLALTIWILKVMWFSPAGMGHLCVTKDGL-RLEGESEF--LFPLYAKEIHSRVDSSLL
50 60 70 80 90 100
140 150 160 170 180
pF1KE4 ITGNNQPIV------------FQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILFSTDY
. .... : .. : . :.:.. .:.:. : .: .... .::
XP_005 LQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTD-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 ETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAI-VRGNEGVFIMGKTIEFHM
. : : .: ... : . .. .:: .. :.. . . .:: :.... ...
XP_005 -KLRVTGPEG--ALFEHSVETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 GGNMELKAENSIILNGSVMVS--TTRLPSSSSGDQLGSGD-WVRYKLCMCADGTLFKVQV
..:.. ..: .: .... :. ::. .: ::. :..:.: :: :. ..:
XP_005 LSQMDILFHSS---DGMLVLDAETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLY-LSV
230 240 250 260 270
310
pF1KE4 TSQNMGCQISDNPCGNTH
.. . :: .. :
XP_005 AGVSTTCQEHNHICL
280 290
>>XP_006719924 (OMIM: 253700,608896) PREDICTED: gamma-sa (309 aa)
initn: 64 init1: 45 opt: 210 Z-score: 283.6 bits: 60.6 E(85289): 4.7e-09
Smith-Waterman score: 210; 23.6% identity (58.5% similar) in 284 aa overlap (48-314:37-308)
20 30 40 50 60 70
pF1KE4 VKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRG-RKGNLAICVIILLFILA
... ..: :. : :: : . :..::.::
XP_006 AVCAPGLQEVQQMVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIIL-
10 20 30 40 50 60
80 90 100 110 120 130
pF1KE4 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLV
:.:: .:. : :. ..: : . ..:: :.. :.. . ::: . . .: . .:.
XP_006 VVNLALTIWILKVMWFSPAGMGHLCVTKDGL-RLEGESEF--LFPLYAKEIHSRVDSSLL
70 80 90 100 110 120
140 150 160 170 180
pF1KE4 ITGNNQPIV------------FQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILFSTDY
. .... : .. : . :.:.. .:.:. : .: .... .::
XP_006 LQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTD-
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAI-VRGNEGVFIMGKTIEFHM
. : : .: ... : . .. .:: .. :.. . . .:: :.... ...
XP_006 -KLRVTGPEG--ALFEHSVETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEA
190 200 210 220 230
250 260 270 280 290 300
pF1KE4 GGNMELKAENSIILNGSVMVS--TTRLPSSSSGDQLGSGD-WVRYKLCMCADGTLFKVQV
..:.. ..: .: .... :. ::. .: ::. :..:.: :: :. ..:
XP_006 LSQMDILFHSS---DGMLVLDAETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLY-LSV
240 250 260 270 280 290
310
pF1KE4 TSQNMGCQISDNPCGNTH
.. . :: .. :
XP_006 AGVSTTCQEHNHICL
300
>>NP_000222 (OMIM: 253700,608896) gamma-sarcoglycan [Hom (291 aa)
initn: 64 init1: 45 opt: 208 Z-score: 281.3 bits: 60.1 E(85289): 6.3e-09
Smith-Waterman score: 208; 23.6% identity (58.5% similar) in 284 aa overlap (48-314:19-290)
20 30 40 50 60 70
pF1KE4 VKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRG-RKGNLAICVIILLFILA
... ..: :. : :: : . :..::.::
NP_000 MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIIL-
10 20 30 40
80 90 100 110 120 130
pF1KE4 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLV
:.:: .:. : :. ..: : . ..:: :.. :.. . ::: . . .: . .:.
NP_000 VVNLALTIWILKVMWFSPAGMGHLCVTKDGL-RLEGESEF--LFPLYAKEIHSRVDSSLL
50 60 70 80 90 100
140 150 160 170 180
pF1KE4 ITGNNQPIV------------FQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILFSTDY
. .... : .. : . :.:.. .:.:. : .: .... .::
NP_000 LQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTD-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 ETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAI-VRGNEGVFIMGKTIEFHM
. : : .: ... : . .. .:: .. :.. . . .:: :.... ...
NP_000 -KLRVTGPEG--ALFEHSVETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 GGNMELKAENSIILNGSVMVS--TTRLPSSSSGDQLGSGD-WVRYKLCMCADGTLFKVQV
..:.. ..: .: .... :. ::. .: ::. :..:.: :: :. ..:
NP_000 LSQMDILFHSS---DGMLVLDAETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLY-LSV
230 240 250 260 270
310
pF1KE4 TSQNMGCQISDNPCGNTH
.. . :: .. :
NP_000 AGVSTTCQEHSHICL
280 290
>>NP_001121681 (OMIM: 601287,601411,606685) delta-sarcog (289 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.9 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:20-288)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
NP_001 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
NP_001 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
50 60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
NP_001 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
NP_001 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
NP_001 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
NP_001 T-CQINTSVCL
280
>>XP_011532923 (OMIM: 601287,601411,606685) PREDICTED: d (289 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.9 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:20-288)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
XP_011 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
XP_011 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
50 60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
XP_011 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
XP_011 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
XP_011 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
XP_011 T-CQINTSVCL
280
>>XP_016865213 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.8 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:21-289)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
XP_016 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40 50
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
XP_016 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
XP_016 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
XP_016 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
XP_016 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270 280
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
XP_016 T-CQINTSVCL
290
>>XP_005266023 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.8 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:21-289)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
XP_005 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40 50
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
XP_005 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
XP_005 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
XP_005 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
XP_005 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270 280
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
XP_005 T-CQINTSVCL
290
>>NP_000328 (OMIM: 601287,601411,606685) delta-sarcoglyc (290 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.8 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:21-289)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
NP_000 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40 50
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
NP_000 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
NP_000 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
NP_000 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
NP_000 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270 280
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
NP_000 T-CQINTSVCL
290
>>XP_016865212 (OMIM: 601287,601411,606685) PREDICTED: d (290 aa)
initn: 125 init1: 78 opt: 198 Z-score: 267.8 bits: 57.6 E(85289): 3.5e-08
Smith-Waterman score: 199; 21.1% identity (56.4% similar) in 280 aa overlap (51-314:21-289)
30 40 50 60 70 80
pF1KE4 SMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINL
...:.:. : . ..::.:: ..::
XP_016 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNL
10 20 30 40 50
90 100 110 120 130
pF1KE4 IITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGR----------
.:. : :. . .: .... :.:: : .: ..::: . . .:
XP_016 AMTIWILKVMNFTIDGMGNLRITEKGL---KLEGDSEFLQPLYAKEIQSRPGNALYFKSA
60 70 80 90 100
140 150 160 170 180
pF1KE4 RNENLVITGNNQPIVFQQGTTKLSVE--NNKTSITSDIGMQFFDPRTQNILFSTDYETHE
:: .. : ... .. : : .:: ..: . . : .:. ..... ... .
XP_016 RNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAE----R
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 FHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV-RGNEGVFIMGKTIEFHMGGNM
... .. .. .. : . .. ..: .. :..: .. .:: : ... ...
XP_016 LRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 ELKAENSIILNGSVMVSTT--RLPSSSSGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQN
::. :.. .: . .... ::: :. .: . ...:.::.: :: :. . .
XP_016 ELRLESK---DGEIKLDAAKIRLPRLPHGSYTPTGTRQKVFEICVCANGRLFLSQAGAGS
230 240 250 260 270 280
310
pF1KE4 MGCQISDNPCGNTH
:::. . :
XP_016 T-CQINTSVCL
290
318 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:35:55 2016 done: Mon Nov 7 16:35:56 2016
Total Scan time: 7.160 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]