FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4303, 298 aa
  1>>>pF1KE4303 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9797+/-0.000466; mu= 17.1564+/- 0.029
 mean_var=57.8130+/-11.287, 0's: 0 Z-trim(107.3): 70  B-trim: 23 in 1/53
 Lambda= 0.168679
 statistics sampled from 15322 (15344) to 15322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.529), E-opt: 0.2 (0.18), width:  16
 Scan time:  6.360

The best scores are:                                      opt bits E(85289)
NP_001001973 (OMIM: 108729) ATP synthase subunit g ( 298) 1853 459.6 3.4e-129
NP_005165 (OMIM: 108729) ATP synthase subunit gamm ( 297) 1845 457.7 1.3e-128
NP_001307815 (OMIM: 108729) ATP synthase subunit g ( 251) 1557 387.5 1.4e-107
XP_016871779 (OMIM: 108729) PREDICTED: ATP synthas ( 250) 1549 385.6 5.4e-107


>>NP_001001973 (OMIM: 108729) ATP synthase subunit gamma  (298 aa)
 initn: 1853 init1: 1853 opt: 1853  Z-score: 2440.5  bits: 459.6 E(85289): 3.4e-129
Smith-Waterman score: 1853; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
              250       260       270       280       290        

>>NP_005165 (OMIM: 108729) ATP synthase subunit gamma, m  (297 aa)
 initn: 1845 init1: 1845 opt: 1845  Z-score: 2430.0  bits: 457.7 E(85289): 1.3e-128
Smith-Waterman score: 1845; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_005 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_005 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 
              250       260       270       280       290        

>>NP_001307815 (OMIM: 108729) ATP synthase subunit gamma  (251 aa)
 initn: 1557 init1: 1557 opt: 1557  Z-score: 2052.4  bits: 387.5 E(85289): 1.4e-107
Smith-Waterman score: 1557; 100.0% identity (100.0% similar) in 251 aa overlap (48-298:1-251)

        20        30        40        50        60        70       
pF1KE4 QWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAERELKPARIYGLGSLALY
                                     ::::::::::::::::::::::::::::::
NP_001                               MKMVAAAKYARAERELKPARIYGLGSLALY
                                             10        20        30

        80        90       100       110       120       130       
pF1KE4 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KE4 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK
              100       110       120       130       140       150

       200       210       220       230       240       250       
pF1KE4 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM
              160       170       180       190       200       210

       260       270       280       290        
pF1KE4 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       :::::::::::::::::::::::::::::::::::::::::
NP_001 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
              220       230       240       250 

>>XP_016871779 (OMIM: 108729) PREDICTED: ATP synthase su  (250 aa)
 initn: 1549 init1: 1549 opt: 1549  Z-score: 2041.9  bits: 385.6 E(85289): 5.4e-107
Smith-Waterman score: 1549; 100.0% identity (100.0% similar) in 250 aa overlap (48-297:1-250)

        20        30        40        50        60        70       
pF1KE4 QWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAERELKPARIYGLGSLALY
                                     ::::::::::::::::::::::::::::::
XP_016                               MKMVAAAKYARAERELKPARIYGLGSLALY
                                             10        20        30

        80        90       100       110       120       130       
pF1KE4 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKI
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KE4 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYK
              100       110       120       130       140       150

       200       210       220       230       240       250       
pF1KE4 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAM
              160       170       180       190       200       210

       260       270       280       290        
pF1KE4 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       :::::::::::::::::::::::::::::::::::::::: 
XP_016 DNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 
              220       230       240       250 




298 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:29:42 2016 done: Sat Nov  5 23:29:43 2016
 Total Scan time:  6.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]