FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4303, 298 aa
  1>>>pF1KE4303 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5244+/-0.00117; mu= 13.9106+/- 0.070
 mean_var=58.9096+/-11.814, 0's: 0 Z-trim(100.1): 39  B-trim: 0 in 0/48
 Lambda= 0.167102
 statistics sampled from 5993 (6001) to 5993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.543), E-opt: 0.2 (0.184), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS31142.1 ATP5C1 gene_id:509|Hs108|chr10         ( 298) 1853 455.5 2.2e-128
CCDS7081.1 ATP5C1 gene_id:509|Hs108|chr10          ( 297) 1845 453.6 8.4e-128


>>CCDS31142.1 ATP5C1 gene_id:509|Hs108|chr10              (298 aa)
 initn: 1853 init1: 1853 opt: 1853  Z-score: 2418.3  bits: 455.5 E(32554): 2.2e-128
Smith-Waterman score: 1853; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS31 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
              250       260       270       280       290        

>>CCDS7081.1 ATP5C1 gene_id:509|Hs108|chr10               (297 aa)
 initn: 1845 init1: 1845 opt: 1845  Z-score: 2407.9  bits: 453.6 E(32554): 8.4e-128
Smith-Waterman score: 1845; 99.7% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE4 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKIAKSMKMVAAAKYARAE
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS70 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE4 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS70 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 
              250       260       270       280       290        




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:29:41 2016 done: Sat Nov  5 23:29:41 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]