Result of FASTA (ccds) for
pFN21AE4231
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4231, 815 aa
1>>>pF1KE4231 815 - 815 aa - 815 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0085+/-0.000905; mu= 12.3859+/- 0.055
mean_var=99.4603+/-20.332, 0's: 0 Z-trim(107.9): 43 B-trim: 0 in 0/51
Lambda= 0.128602
statistics sampled from 9835 (9873) to 9835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.303), width: 16
Scan time: 4.360
The best scores are: opt bits E(32554)
CCDS1515.1 KCTD3 gene_id:51133|Hs108|chr1 ( 815) 5399 1012.6 0
CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 ( 707) 2795 529.4 7.9e-150
>>CCDS1515.1 KCTD3 gene_id:51133|Hs108|chr1 (815 aa)
initn: 5399 init1: 5399 opt: 5399 Z-score: 5413.4 bits: 1012.6 E(32554): 0
Smith-Waterman score: 5399; 99.9% identity (99.9% similar) in 815 aa overlap (1-815:1-815)
10 20 30 40 50 60
pF1KE4 MAGGHCGSVPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETG
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MAGGHCGSFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 AIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 PVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 GPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 GVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 RSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 SYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 SYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 CEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 CEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 LSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRPYRESPLLARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRPYRESPLLARAR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 RTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNISERKSPGVEIKSLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNISERKSPGVEIKSLR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE4 ELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKVPYLASSPSTS
730 740 750 760 770 780
790 800 810
pF1KE4 DGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL
:::::::::::::::::::::::::::::::::::
CCDS15 DGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL
790 800 810
>>CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 (707 aa)
initn: 2817 init1: 2101 opt: 2795 Z-score: 2803.3 bits: 529.4 E(32554): 7.9e-150
Smith-Waterman score: 2810; 65.9% identity (83.3% similar) in 657 aa overlap (17-661:18-657)
10 20 30 40 50
pF1KE4 MAGGHCGSVPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDET
::...::::: ::::::::: ::::::::::::::::::.:::
CCDS12 MAAAATAAEGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 GAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSS
:::::::::..:::::::::::::: ::: . : :::.:::.::::::: : :::.:::
CCDS12 GAIFIDRDPTVFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLREELDRSS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 CGSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRL-
::.:::.:::::: .: .. : .: . . :.. . .: ..:.: :.. :.
CCDS12 CGNVLFNGYLPPPVFPVKRRNR--HSLVGPQQLGGRPAPVRRSNTMPPNLGNAGLLGRML
130 140 150 160 170
180 190 200 210 220
pF1KE4 ---------GFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTI
: : .: : .: ::::::..::..: ::::.::.:::: ::.:: ::: :
CCDS12 DEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAYTQFLVCYRLKEASGWQLVFSSPRLDWPI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE4 ERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGN
::.::.:.: :: :..:::::.:. : :.::..: :.::::::: :::::.::::.::
CCDS12 ERLALTARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEALFFVGN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE4 QLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRM
::.::::::..:::::::.:::::.: ::::::.::::::::::::::::.:.:::::::
CCDS12 QLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVDVQKFPLRM
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE4 KDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGS
:::::::.:::.::..:..:::::::::::: ::::::::::::::.:::::::::::::
CCDS12 KDNDLLVSELYRDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGS
360 370 380 390 400 410
410 420 430 440 450 460
pF1KE4 GPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFK
:::::::::::::::::::::::::.::::::::::::.:::::::::::::::::::::
CCDS12 GPQLFQTFTVHRSPVTKIMLSEKHLISVCADNNHVRTWSVTRFRGMISTQPGSTPLASFK
420 430 440 450 460 470
470 480 490 500 510 520
pF1KE4 ILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVD
::.:: ...::. :.::::::.::::::::::::::: ...:::::::::.:.: ...::
CCDS12 ILALESADGHGGCSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVD
480 490 500 510 520 530
530 540 550 560 570 580
pF1KE4 CTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKSEDKDVGGPTE
. ..::: ::::: :.::::::::.::..:::. ::::::::: .... .:: ::
CCDS12 GSPTTAFTVLECEGSRRLGSRPRRYLLTGQANGSLAMWDLTTAMDGLGQAP---AGGLTE
540 550 560 570 580 590
590 600 610 620 630 640
pF1KE4 EELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRESNSSLQLQHHDTTHEAATYGSMRP
.::.. :..:.:. : :: :. . . : . ..: . : :.. :.
CCDS12 QELMEQLEHCELA------P---PAPSAPSWGCLPSPSPRISL---TSLHSASSNTSLSG
600 610 620 630 640
650 660 670 680 690 700
pF1KE4 YR--ESPLLARARRTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGATGECNIS
.: :: :.:::
CCDS12 HRGSPSPPQAEARRRGGGSFVERCQELVRSGPDLRRPPTPAPWPSSGLGTPLTPPKMKLN
650 660 670 680 690 700
815 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:28:24 2016 done: Sun Nov 6 01:28:24 2016
Total Scan time: 4.360 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]