FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4176, 638 aa
  1>>>pF1KE4176 638 - 638 aa - 638 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8269+/-0.000941; mu= 7.1989+/- 0.057
 mean_var=318.3040+/-65.409, 0's: 0 Z-trim(115.5): 48  B-trim: 0 in 0/54
 Lambda= 0.071887
 statistics sampled from 16000 (16041) to 16000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.493), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(32554)
CCDS32737.1 TRIM47 gene_id:91107|Hs108|chr17       ( 638) 4439 474.2 2.4e-133
CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17       ( 564)  624 78.5 2.8e-14


>>CCDS32737.1 TRIM47 gene_id:91107|Hs108|chr17            (638 aa)
 initn: 4439 init1: 4439 opt: 4439  Z-score: 2507.6  bits: 474.2 E(32554): 2.4e-133
Smith-Waterman score: 4439; 99.8% identity (99.8% similar) in 638 aa overlap (1-638:1-638)

               10        20        30        40        50        60
pF1KE4 MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 FPDGLQLRKNHTLSELLQLRQGSGPGSGPGPAPALAPEPSAPSALPSVPEPSAPCAPEPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FPDGLQLRKNHTLSELLQLRQGSGPGSGPGPAPALAPEPSAPSALPSVPEPSAPCAPEPW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 PAGEEPVRCDACPEGAALPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PAGEEPVRCDACPEGAALPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LCPRHLWPLERYCRAERVCLCEACAAQEHRGHELVPLEQERALQEAEQSKVLSAVEDRMD
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LCPRHLRPLERYCRAERVCLCEACAAQEHRGHELVPLEQERALQEAEQSKVLSAVEDRMD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ELGAGIAQSRRTVALIKSAAVAERERVSRLFADAAAALQGFQTQVLGFIEEGEAAMLGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELGAGIAQSRRTVALIKSAAVAERERVSRLFADAAAALQGFQTQVLGFIEEGEAAMLGRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QGDLRRQEEQRSRLSRARQNLSQVPEADSVSFLQELLALRLALEDGCGPGPGPPRELSFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QGDLRRQEEQRSRLSRARQNLSQVPEADSVSFLQELLALRLALEDGCGPGPGPPRELSFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 KSSQAVRAVRDMLAVACVNQWEQLRGPGGNEDGPQKLDSEADAEPQDLESTNLLESEAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KSSQAVRAVRDMLAVACVNQWEQLRGPGGNEDGPQKLDSEADAEPQDLESTNLLESEAPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 DYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPLSPTRFTHCEQVLGEGALDRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPLSPTRFTHCEQVLGEGALDRG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 TYYWEVEIIEGWVSMGVMAEDFSPQEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TYYWEVEIIEGWVSMGVMAEDFSPQEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAPL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 PHPFSPTVGVCLEYADRALAFYAVRDGKMSLLRRLKASRPRRGGIPASPIDPFQSRLDSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PHPFSPTVGVCLEYADRALAFYAVRDGKMSLLRRLKASRPRRGGIPASPIDPFQSRLDSH
              550       560       570       580       590       600

              610       620       630        
pF1KE4 FAGLFTHRLKPAFFLESVDAHLQIGPLKKSCISVLKRR
       ::::::::::::::::::::::::::::::::::::::
CCDS32 FAGLFTHRLKPAFFLESVDAHLQIGPLKKSCISVLKRR
              610       620       630        

>>CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17            (564 aa)
 initn: 604 init1: 203 opt: 624  Z-score: 369.9  bits: 78.5 E(32554): 2.8e-14
Smith-Waterman score: 629; 27.9% identity (56.9% similar) in 541 aa overlap (73-580:1-529)

             50        60        70        80         90           
pF1KE4 SGAGGPGGAARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSGP-GSGPGPAP----ALAP
                                     ..::  .  :  : ...  :::    . .:
CCDS11                               MAELDLMAPGPLPRATAQPPAPLSPDSGSP
                                             10        20        30

       100                     110       120        130        140 
pF1KE4 EPSAPSALP--------------SVPEPSAPCAPEPWPAGE-EPVRCDACPEGAA-LPAA
        :.. :: :               . : ..  : .  :::: . : :: : . .  . :.
CCDS11 SPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTRRVKAV
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KE4 LSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEESLCPRHLWPLERYCRAERVCLC
        :::.:....:  :: ::. .  :..: :. :..  .   :: :  ::  .:  .. :.:
CCDS11 KSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAHHSPLSAFCCPDQQCIC
              100       110       120       130       140       150

             210       220       230         240       250         
pF1KE4 EACAAQEHRGHELVPLEQERALQEAEQSKVLSAVEDRM--DELGAGIAQSRRTVALIKSA
       . :  ::: :: .: :.  :  .::: . .   .: ..  .: . .  :. .  .:.   
CCDS11 QDCC-QEHSGHTIVSLDAARRDKEAELQCTQLDLERKLKLNENAISRLQANQKSVLV---
               160       170       180       190       200         

     260       270        280       290       300       310        
pF1KE4 AVAERERVSRL-FADAAAALQGFQTQVLGFIEEGEAAMLGRSQGDLRRQEEQRS-RLSRA
       .:.: . :... :..  ::..  :..:. :.:: : : :....: .. . : :: .. ..
CCDS11 SVSEVKAVAEMQFGELLAAVRKAQANVMLFLEEKEQAALSQANG-IKAHLEYRSAEMEKS
        210       220       230       240       250        260     

       320        330       340       350       360       370      
pF1KE4 RQNLSQVPE-ADSVSFLQELLALRLALEDGCGPGPGPPRELSFTKSSQAVRAVRDMLAVA
       .:.: ..   ...:.::.:   ..   ::   :.      ...  . ...: :    .: 
CCDS11 KQELERMAAISNTVQFLEEYCKFK-NTEDITFPSV----YVGLKDKLSGIRKVITESTVH
         270       280        290           300       310       320

        380       390         400       410       420       430    
pF1KE4 CVNQWEQLRGPGGNEDGPQKLD--SEADAEPQDLESTNLLESEAPRDYFLKFAYIVDLDS
        ..  :. .    . .  .. :  ....:  :    :.  :  . :. ::..:: . .: 
CCDS11 LIQLLENYKKKLQEFSKEEEYDIRTQVSAVVQRKYWTSKPEP-STREQFLQYAYDITFDP
              330       340       350       360        370         

          440       450         460       470       480       490  
pF1KE4 DTADKFLQLFGTKGVKRVLCPIN--YPLSPTRFTHCEQVLGEGALDRGTYYWEVEIIEGW
       ::: :.:.:   .       : .  ::  :.:: : .:::.. .:    ::.::::. . 
CCDS11 DTAHKYLRLQEENRKVTNTTPWEHPYPDLPSRFLHWRQVLSQQSLYLHRYYFEVEIFGAG
     380       390       400       410       420       430         

            500       510       520       530       540        550 
pF1KE4 VSMGVMAEDFSPQEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAPLPH-PFSPTVGVC
       . .:.  . .. .     . .. :  :  :::::. :..:.  .:.::   ::   .:: 
CCDS11 TYVGLTCKGIDRKGEERNSCISGNNFSWSLQWNGKEFTAWYSDMETPLKAGPFR-RLGVY
     440       450       460       470       480       490         

             560       570         580       590       600         
pF1KE4 LEYADRALAFYAVRDGKMSLLRRL--KASRPRRGGIPASPIDPFQSRLDSHFAGLFTHRL
       ...    :.::.:.   :.:....  : :.:                             
CCDS11 IDFPGGILSFYGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAPS
      500       510       520       530       540       550        

     610       620       630        
pF1KE4 KPAFFLESVDAHLQIGPLKKSCISVLKRR
                                    
CCDS11 LVGTAP                       
      560                           




638 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:54:38 2016 done: Sat Nov  5 22:54:39 2016
 Total Scan time:  4.380 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]