FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4172, 633 aa
  1>>>pF1KE4172 633 - 633 aa - 633 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1383+/-0.00114; mu= 11.2713+/- 0.068
 mean_var=137.1666+/-28.889, 0's: 0 Z-trim(106.8): 94  B-trim: 37 in 1/50
 Lambda= 0.109509
 statistics sampled from 9099 (9192) to 9099 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.282), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS33348.1 ZSWIM2 gene_id:151112|Hs108|chr2       ( 633) 4386 705.2  7e-203


>>CCDS33348.1 ZSWIM2 gene_id:151112|Hs108|chr2            (633 aa)
 initn: 4386 init1: 4386 opt: 4386  Z-score: 3755.9  bits: 705.2 E(32554): 7e-203
Smith-Waterman score: 4386; 100.0% identity (100.0% similar) in 633 aa overlap (1-633:1-633)

               10        20        30        40        50        60
pF1KE4 MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 PHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 PGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 PIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 PCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 EPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 KKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 LSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGE
              550       560       570       580       590       600

              610       620       630   
pF1KE4 ITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL
       :::::::::::::::::::::::::::::::::
CCDS33 ITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL
              610       620       630   




633 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:23:53 2016 done: Mon Nov  7 17:23:53 2016
 Total Scan time:  3.490 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]