FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4143, 569 aa
  1>>>pF1KE4143 569 - 569 aa - 569 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4567+/-0.00103; mu= -4.0131+/- 0.061
 mean_var=288.4469+/-60.488, 0's: 0 Z-trim(113.4): 51  B-trim: 117 in 1/51
 Lambda= 0.075516
 statistics sampled from 13963 (13997) to 13963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.43), width:  16
 Scan time:  4.240

The best scores are:                                      opt bits E(32554)
CCDS42140.1 RABEP2 gene_id:79874|Hs108|chr16       ( 569) 3596 405.3  1e-112
CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17        ( 829)  593 78.3 4.2e-14


>>CCDS42140.1 RABEP2 gene_id:79874|Hs108|chr16            (569 aa)
 initn: 3596 init1: 3596 opt: 3596  Z-score: 2137.2  bits: 405.3 E(32554): 1e-112
Smith-Waterman score: 3596; 99.8% identity (100.0% similar) in 569 aa overlap (1-569:1-569)

               10        20        30        40        50        60
pF1KE4 MAAAAPVAADDDERRRRPGSALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAV
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAAAPVAADDDERRRRPGAALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 AEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALKQERQQQQQDCEEKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALKQERQQQQQDCEEKER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKEIEELKAKLLRAEELIQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKEIEELKAKLLRAEELIQEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 QRRPRHAPSLHGSTELLPLSRDPSPPLEPLEELSGDGGPAAEAFAHNCDDSASISSFSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QRRPRHAPSLHGSTELLPLSRDPSPPLEPLEELSGDGGPAAEAFAHNCDDSASISSFSLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GGVGSSSSLPQSRQGLSPEQEETASLVSTGTLVPEGIYLPPPGYQLVPDTQWEQLQTEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GGVGSSSSLPQSRQGLSPEQEETASLVSTGTLVPEGIYLPPPGYQLVPDTQWEQLQTEGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QLQKDLESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QLQKDLESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 LQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 LCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQLRVQREETEVLEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQLRVQREETEVLEAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 LCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQRDFVRLSQALQVRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQRDFVRLSQALQVRLE
              490       500       510       520       530       540

              550       560         
pF1KE4 RIRQAETLEQVRSIMDEAPLTDVRDIKDT
       :::::::::::::::::::::::::::::
CCDS42 RIRQAETLEQVRSIMDEAPLTDVRDIKDT
              550       560         

>>CCDS42243.1 RABEP1 gene_id:9135|Hs108|chr17             (829 aa)
 initn: 782 init1: 359 opt: 593  Z-score: 366.7  bits: 78.3 E(32554): 4.2e-14
Smith-Waterman score: 686; 30.2% identity (62.0% similar) in 553 aa overlap (76-569:291-829)

          50        60        70        80        90       100     
pF1KE4 ELAGALAEMETMKAVAEVSESTKAEAVAAVQRQCQEEVASLQAILKDSISSYEAQITALK
                                     ::  ....  .. .:    :    :.  ::
CCDS42 EVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVL---TSEQLRQVEELK
              270       280       290       300          310       

            110       120       130       140       150       160  
pF1KE4 ---QERQQQQQDCEEKERELGRLKQLLSRAYPLDSLEKQMEKAHEDSEKLREIVLPMEKE
          :: ..::.  ..:... . ... ..   :.     : :.. . :.. .: .   .  
CCDS42 KKDQEDDEQQRLNKRKDHKKADVEEEIK--IPVVCALTQEESSAQLSNE-EEHLDSTRGS
       320       330       340         350       360        370    

            170                180       190         200        210
pF1KE4 IEELKAKLL---------RAEELIQEIQRRPRHAPSL--HGSTELLPLSRD-PSPPLEPL
       .. : : ::           ......  :: . . ::   :: .   :. .  .     :
CCDS42 VHSLDAGLLLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNL
          380       390       400       410       420       430    

                220       230       240       250       260        
pF1KE4 EELSGDGGP--AAEAFAHNCDDSASISSFSLGGGVGSSSSLPQSRQGLSPEQEETASLVS
       .:  .: ::  .:.. ..: : .::..:... .:   ...  .. ....:::::::::.:
CCDS42 DE--SDFGPLVGADSVSENFD-TASLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLS
            440       450        460       470       480       490 

      270       280       290               300                    
pF1KE4 TGTLVPEGIYLPPPGYQLVPDTQWEQLQTE--------GR----------QLQ-------
       . :   :. :. : ::.:: .:.:. :: :        ::          :::       
CCDS42 SVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEA
             500       510       520       530       540       550 

                            310       320       330       340      
pF1KE4 --KD---------------LESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLR
         .:               ::.. ....::.. ...:.:: ..:...:. ..: :: ::.
CCDS42 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE
             560       570       580       590       600       610 

        350       360       370       380       390       400      
pF1KE4 TLQGTVSQAQERVQLQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGE
        ::  .:::.. :: ::: :. ... . .:. ::...:..:....    . :     :.:
CCDS42 ELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQ-----QAE
             620       630       640       650       660           

        410       420       430       440       450       460      
pF1KE4 EESLPSSVPELQQLLCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQ
       .  ::...  :..:.   :..      : .:  :.:. ::. :.: .. :   . .::  
CCDS42 DFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLKENLEET
        670       680       690       700       710       720      

        470       480       490       500       510       520      
pF1KE4 LRVQREETEVLEASLCSLRTEMERVQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQR
       :... :. .   ::. ::..:.::.. :...: . .:. :.. :. :::.::..::::::
CCDS42 LQLEIENCKEEIASISSLKAELERIKVEKGQATVEQLMFEEKNKAQRLQTELDVSEQVQR
        730       740       750       760       770       780      

        530       540       550       560         
pF1KE4 DFVRLSQALQVRLERIRQAETLEQVRSIMDEAPLTDVRDIKDT
       :::.:::.:::.:::::::..::..:.:.... :::. .. .:
CCDS42 DFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQLPET
        790       800       810       820         




569 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:49:10 2016 done: Sun Nov  6 01:49:11 2016
 Total Scan time:  4.240 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]