FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4139, 555 aa
  1>>>pF1KE4139 555 - 555 aa - 555 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4032+/-0.000346; mu= 19.1272+/- 0.022
 mean_var=82.2133+/-16.561, 0's: 0 Z-trim(115.5): 46  B-trim: 79 in 1/50
 Lambda= 0.141450
 statistics sampled from 25909 (25952) to 25909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.304), width:  16
 Scan time: 11.040

The best scores are:                                      opt bits E(85289)
NP_976046 (OMIM: 609103) F-box only protein 33 [Ho ( 555) 3692 763.3       0
XP_005250316 (OMIM: 609097) PREDICTED: F-box only  ( 561)  199 50.5 1.6e-05
NP_036304 (OMIM: 609097) F-box only protein 24 iso ( 618)  199 50.6 1.8e-05


>>NP_976046 (OMIM: 609103) F-box only protein 33 [Homo s  (555 aa)
 initn: 3692 init1: 3692 opt: 3692  Z-score: 4072.4  bits: 763.3 E(85289):    0
Smith-Waterman score: 3692; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555)

               10        20        30        40        50        60
pF1KE4 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MLLFLSVPQPRPPGARTRAGAARVARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRRGRMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 LCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALWPQLRICLRVSPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 EQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGEEVEALQLSARWLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 VLRTYLELVLCVLVSIRNNRNLQKFSLFGDISVLQQQGSLSNTYLSKVDPDGKKIKQIQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 LFEEILSNSRQLKWLSCGFMLEIVTPTSLSSLSNAVANTMEHLSLLDNNIPGNSTLITAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 ELERFVNLHSLALDFCDFTAEMARVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 KALSRKSTSFRVYIMAFDIKSEDMLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 FLTHFILMNDVIDTSGFPDLSDNRNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 RGSDLKVLEVTEESIDFDQGELADQDVDPVHNLIEQVSLGLGQPWHAVMDIESLSVFTEP
              490       500       510       520       530       540

              550     
pF1KE4 NRHFYREMQSFSEDI
       :::::::::::::::
NP_976 NRHFYREMQSFSEDI
              550     

>>XP_005250316 (OMIM: 609097) PREDICTED: F-box only prot  (561 aa)
 initn: 147 init1:  60 opt: 199  Z-score: 219.9  bits: 50.5 E(85289): 1.6e-05
Smith-Waterman score: 199; 36.1% identity (59.0% similar) in 122 aa overlap (10-122:14-129)

                   10        20         30        40           50  
pF1KE4     MLLFLSVPQPRPPGARTRAGAARVARW-RRLRLQQLRRLRGL---LRVLRGRPGAG
                    ::   .:.: :: :..:  .: .::.. :: :    ::: :. :. :
XP_005 MVWESQQERGGQGPRRQEGRSREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCG
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KE4 SR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPAL
       :.     .::.    :.  .   .: ::. ::.::::. : .  . .: ...:     ..
XP_005 SELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGV
               70            80        90       100       110      

       110       120       130       140       150       160       
pF1KE4 WPQLRICLRVSPAEQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGE
       :   ::: :.::  :                                             
XP_005 W--RRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGY
          120       130       140       150       160       170    

>>NP_036304 (OMIM: 609097) F-box only protein 24 isoform  (618 aa)
 initn: 121 init1:  60 opt: 199  Z-score: 219.4  bits: 50.6 E(85289): 1.8e-05
Smith-Waterman score: 199; 36.1% identity (59.0% similar) in 122 aa overlap (10-122:14-129)

                   10        20         30        40           50  
pF1KE4     MLLFLSVPQPRPPGARTRAGAARVARW-RRLRLQQLRRLRGL---LRVLRGRPGAG
                    ::   .:.: :: :..:  .: .::.. :: :    ::: :. :. :
NP_036 MVWESQQERGGQGPRRQEGRSREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCG
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KE4 SR-----RRGRMALCGQAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPAL
       :.     .::.    :.  .   .: ::. ::.::::. : .  . .: ...:     ..
NP_036 SELGVEEKRGK----GNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGV
               70            80        90       100       110      

       110       120       130       140       150       160       
pF1KE4 WPQLRICLRVSPAEQPRLEFLMRKCGWFVRELRVEFAAENYLSGGGPGDGGGADTGTGGE
       :   ::: :.::  :                                             
NP_036 W--RRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGY
          120       130       140       150       160       170    




555 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:41:03 2016 done: Sat Nov  5 22:41:05 2016
 Total Scan time: 11.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]