Result of FASTA (omim) for
pFN21AE4114
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4114, 487 aa
1>>>pF1KE4114 487 - 487 aa - 487 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8708+/-0.000341; mu= 18.1268+/- 0.021
mean_var=181.1409+/-38.663, 0's: 0 Z-trim(120.3): 249 B-trim: 1763 in 1/55
Lambda= 0.095294
statistics sampled from 34967 (35423) to 34967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.415), width: 16
Scan time: 9.360
The best scores are: opt bits E(85289)
NP_001268380 (OMIM: 612548) E3 ubiquitin-protein l ( 487) 3393 478.9 1.4e-134
NP_835226 (OMIM: 612548) E3 ubiquitin-protein liga ( 487) 3393 478.9 1.4e-134
XP_011514091 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 486) 3375 476.5 7.5e-134
NP_001268379 (OMIM: 612548) E3 ubiquitin-protein l ( 486) 3375 476.5 7.5e-134
XP_011514089 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 304) 2011 288.6 1.6e-77
XP_011514090 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 278) 1951 280.3 4.7e-75
NP_944606 (OMIM: 612549) tripartite motif-containi ( 250) 1578 229.0 1.2e-59
NP_001304744 (OMIM: 612550) tripartite motif-conta ( 250) 1568 227.6 3.1e-59
NP_942150 (OMIM: 612550) tripartite motif-containi ( 250) 1568 227.6 3.1e-59
XP_011514489 (OMIM: 612550) PREDICTED: tripartite ( 250) 1568 227.6 3.1e-59
XP_011514491 (OMIM: 612550) PREDICTED: tripartite ( 249) 1550 225.1 1.7e-58
XP_011514492 (OMIM: 612550) PREDICTED: tripartite ( 228) 1217 179.3 1e-44
NP_001008275 (OMIM: 613288) tripartite motif-conta ( 477) 972 146.1 2.1e-34
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 812 124.1 8.9e-28
XP_016857118 (OMIM: 616755) PREDICTED: E3 ubiquiti ( 555) 789 121.0 8.5e-27
NP_060677 (OMIM: 616755) E3 ubiquitin-protein liga ( 475) 779 119.6 2e-26
NP_892030 (OMIM: 616017) E3 ubiquitin-protein liga ( 500) 759 116.8 1.4e-25
XP_016878743 (OMIM: 613288) PREDICTED: tripartite ( 333) 640 100.2 9.4e-21
NP_741983 (OMIM: 617007) tripartite motif-containi ( 493) 596 94.4 7.8e-19
NP_976038 (OMIM: 609315) tripartite motif-containi ( 511) 564 90.0 1.7e-17
NP_060543 (OMIM: 613184) E3 ubiquitin-protein liga ( 485) 558 89.2 2.9e-17
NP_001317412 (OMIM: 616755) E3 ubiquitin-protein l ( 354) 548 87.6 6.2e-17
NP_542783 (OMIM: 616017) E3 ubiquitin-protein liga ( 341) 538 86.2 1.6e-16
NP_001288073 (OMIM: 616017) E3 ubiquitin-protein l ( 296) 530 85.0 3.1e-16
XP_016857119 (OMIM: 616755) PREDICTED: E3 ubiquiti ( 544) 531 85.5 4e-16
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 518 83.7 1.3e-15
NP_001288075 (OMIM: 616017) E3 ubiquitin-protein l ( 263) 504 81.4 3.5e-15
NP_001288074 (OMIM: 616017) E3 ubiquitin-protein l ( 279) 504 81.4 3.6e-15
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 497 80.8 9.4e-15
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 493 80.2 1.4e-14
NP_291027 (OMIM: 610530) E3 ubiquitin-protein liga ( 630) 481 78.8 5.1e-14
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 467 76.7 1.7e-13
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 467 76.7 1.7e-13
NP_006769 (OMIM: 605701) tripartite motif-containi ( 481) 460 75.7 3.3e-13
NP_976040 (OMIM: 609315) tripartite motif-containi ( 303) 455 74.7 4e-13
NP_976039 (OMIM: 609315) tripartite motif-containi ( 303) 455 74.7 4e-13
NP_976041 (OMIM: 609315) tripartite motif-containi ( 303) 455 74.7 4e-13
XP_016865392 (OMIM: 609315) PREDICTED: tripartite ( 303) 455 74.7 4e-13
NP_976042 (OMIM: 609315) tripartite motif-containi ( 329) 455 74.8 4.2e-13
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 457 75.3 4.5e-13
XP_011538873 (OMIM: 111620,111750,609017) PREDICTE ( 468) 452 74.6 6.9e-13
XP_006710376 (OMIM: 111620,111750,609017) PREDICTE ( 475) 450 74.3 8.4e-13
NP_061008 (OMIM: 111620,111750,609017) erythroid m ( 475) 450 74.3 8.4e-13
XP_011538872 (OMIM: 111620,111750,609017) PREDICTE ( 475) 450 74.3 8.4e-13
NP_001017922 (OMIM: 111620,111750,609017) erythroi ( 475) 450 74.3 8.4e-13
XP_011512525 (OMIM: 605701) PREDICTED: tripartite ( 499) 449 74.2 9.5e-13
XP_011512523 (OMIM: 605701) PREDICTED: tripartite ( 499) 449 74.2 9.5e-13
XP_011512524 (OMIM: 605701) PREDICTED: tripartite ( 499) 449 74.2 9.5e-13
XP_006714995 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 520) 445 73.7 1.4e-12
XP_006714992 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 543) 445 73.7 1.5e-12
>>NP_001268380 (OMIM: 612548) E3 ubiquitin-protein ligas (487 aa)
initn: 3393 init1: 3393 opt: 3393 Z-score: 2537.4 bits: 478.9 E(85289): 1.4e-134
Smith-Waterman score: 3393; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
430 440 450 460 470 480
pF1KE4 PEQPTKL
:::::::
NP_001 PEQPTKL
>>NP_835226 (OMIM: 612548) E3 ubiquitin-protein ligase T (487 aa)
initn: 3393 init1: 3393 opt: 3393 Z-score: 2537.4 bits: 478.9 E(85289): 1.4e-134
Smith-Waterman score: 3393; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
430 440 450 460 470 480
pF1KE4 PEQPTKL
:::::::
NP_835 PEQPTKL
>>XP_011514091 (OMIM: 612548) PREDICTED: E3 ubiquitin-pr (486 aa)
initn: 1724 init1: 1724 opt: 3375 Z-score: 2524.0 bits: 476.5 E(85289): 7.5e-134
Smith-Waterman score: 3375; 99.8% identity (99.8% similar) in 487 aa overlap (1-487:1-486)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IR-FHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290
310 320 330 340 350 360
pF1KE4 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE4 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE4 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
420 430 440 450 460 470
pF1KE4 PEQPTKL
:::::::
XP_011 PEQPTKL
480
>>NP_001268379 (OMIM: 612548) E3 ubiquitin-protein ligas (486 aa)
initn: 1724 init1: 1724 opt: 3375 Z-score: 2524.0 bits: 476.5 E(85289): 7.5e-134
Smith-Waterman score: 3375; 99.8% identity (99.8% similar) in 487 aa overlap (1-487:1-486)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IR-FHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290
310 320 330 340 350 360
pF1KE4 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE4 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE4 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLS
420 430 440 450 460 470
pF1KE4 PEQPTKL
:::::::
NP_001 PEQPTKL
480
>>XP_011514089 (OMIM: 612548) PREDICTED: E3 ubiquitin-pr (304 aa)
initn: 2042 init1: 2009 opt: 2011 Z-score: 1512.6 bits: 288.6 E(85289): 1.6e-77
Smith-Waterman score: 2011; 97.7% identity (98.7% similar) in 301 aa overlap (1-301:1-300)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
:::::::::::::::::::::::::::::::::::::::::::::::::::. :. : :
XP_011 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPGSSPV-LAP
250 260 270 280 290
310 320 330 340 350 360
pF1KE4 ATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSD
.
XP_011 SRPWG
300
>>XP_011514090 (OMIM: 612548) PREDICTED: E3 ubiquitin-pr (278 aa)
initn: 1951 init1: 1951 opt: 1951 Z-score: 1468.4 bits: 280.3 E(85289): 4.7e-75
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 278 aa overlap (210-487:1-278)
180 190 200 210 220 230
pF1KE4 QELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHK
::::::::::::::::::::::::::::::
XP_011 MQLEQAQGTRERLAQAECVLEQFGNEDHHK
10 20 30
240 250 260 270 280 290
pF1KE4 FIRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLD
40 50 60 70 80 90
300 310 320 330 340 350
pF1KE4 PATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KE4 DWRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DWRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLH
160 170 180 190 200 210
420 430 440 450 460 470
pF1KE4 YEQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPL
220 230 240 250 260 270
480
pF1KE4 SPEQPTKL
::::::::
XP_011 SPEQPTKL
>>NP_944606 (OMIM: 612549) tripartite motif-containing p (250 aa)
initn: 1578 init1: 1578 opt: 1578 Z-score: 1191.8 bits: 229.0 E(85289): 1.2e-59
Smith-Waterman score: 1578; 93.2% identity (96.8% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_944 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_944 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::: ::::::::::.::::::::::::::::::.:::::::::::::::::::::
NP_944 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_944 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
: ::::::::
NP_944 IWKFHSMASR
250
>>NP_001304744 (OMIM: 612550) tripartite motif-containin (250 aa)
initn: 1568 init1: 1568 opt: 1568 Z-score: 1184.3 bits: 227.6 E(85289): 3.1e-59
Smith-Waterman score: 1568; 92.8% identity (96.4% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::: :::: :::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_001 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::: ::::::::::.::::::::::::::::::.:::::::::::::::::::::
NP_001 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
: ::::::::
NP_001 IWKFHSMASR
250
>>NP_942150 (OMIM: 612550) tripartite motif-containing p (250 aa)
initn: 1568 init1: 1568 opt: 1568 Z-score: 1184.3 bits: 227.6 E(85289): 3.1e-59
Smith-Waterman score: 1568; 92.8% identity (96.4% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::: :::: :::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_942 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_942 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::: ::::::::::.::::::::::::::::::.:::::::::::::::::::::
NP_942 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_942 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
: ::::::::
NP_942 IWKFHSMASR
250
>>XP_011514489 (OMIM: 612550) PREDICTED: tripartite moti (250 aa)
initn: 1568 init1: 1568 opt: 1568 Z-score: 1184.3 bits: 227.6 E(85289): 3.1e-59
Smith-Waterman score: 1568; 92.8% identity (96.4% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE4 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
::::::: :::: :::::::::::: :::::::::::::::::: :::...:::.: :.:
XP_011 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::: ::::::::::.::::::::::::::::::.:::::::::::::::::::::
XP_011 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
: ::::::::
XP_011 IWKFHSMASR
250
487 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:33:12 2016 done: Mon Nov 7 16:33:14 2016
Total Scan time: 9.360 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]