FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4109, 479 aa
  1>>>pF1KE4109 479 - 479 aa - 479 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5359+/-0.00102; mu= -3.9197+/- 0.062
 mean_var=311.2453+/-63.663, 0's: 0 Z-trim(115.0): 19  B-trim: 162 in 1/53
 Lambda= 0.072698
 statistics sampled from 15513 (15532) to 15513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.477), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS10421.1 FBXL16 gene_id:146330|Hs108|chr16      ( 479) 3246 353.7 2.4e-97


>>CCDS10421.1 FBXL16 gene_id:146330|Hs108|chr16           (479 aa)
 initn: 3246 init1: 3246 opt: 3246  Z-score: 1861.0  bits: 353.7 E(32554): 2.4e-97
Smith-Waterman score: 3246; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KE4 MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPATKNRPCQPPPPPTLPPPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPATKNRPCQPPPPPTLPPPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 AAPLSRAALAGGPCTPAGGPASALAPGHPAERPPLATDEKILNGLFWYFSACEKCVLAQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAPLSRAALAGGPCTPAGGPASALAPGHPAERPPLATDEKILNGLFWYFSACEKCVLAQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 CKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRIT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 DMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLA
              370       380       390       400       410       420

              430       440       450       460       470         
pF1KE4 LGSLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGSLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE
              430       440       450       460       470         




479 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:29:41 2016 done: Sun Nov  6 02:29:42 2016
 Total Scan time:  3.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]