FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4108, 478 aa
  1>>>pF1KE4108 478 - 478 aa - 478 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3508+/-0.00093; mu= 13.2776+/- 0.055
 mean_var=130.8146+/-26.905, 0's: 0 Z-trim(109.8): 97  B-trim: 611 in 2/50
 Lambda= 0.112136
 statistics sampled from 11052 (11163) to 11052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.343), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS3045.1 ABTB1 gene_id:80325|Hs108|chr3          ( 478) 3273 541.2  9e-154
CCDS46901.1 ABTB1 gene_id:80325|Hs108|chr3         ( 336) 2288 381.7 6.6e-106


>>CCDS3045.1 ABTB1 gene_id:80325|Hs108|chr3               (478 aa)
 initn: 3273 init1: 3273 opt: 3273  Z-score: 2874.1  bits: 541.2 E(32554): 9e-154
Smith-Waterman score: 3273; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)

               10        20        30        40        50        60
pF1KE4 MDTSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDTSDLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RCEANTFDGERCLYGALSDPIRRALRDYKQVTASCRRRDYYDDFLQRLLEQGIHSDVVFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RCEANTFDGERCLYGALSDPIRRALRDYKQVTASCRRRDYYDDFLQRLLEQGIHSDVVFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VHGKPFRVHRCVLGARSAYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VHGKPFRVHRCVLGARSAYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQYLYTGRLDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 GVEHVSDCERLAKQCQLWDLLSDLEAKCEKVSEFVASKPGTCVKVLTIEPPPADPRLRED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GVEHVSDCERLAKQCQLWDLLSDLEAKCEKVSEFVASKPGTCVKVLTIEPPPADPRLRED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MALLADCALPPELRGDLWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MALLADCALPPELRGDLWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 LPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEA
              370       380       390       400       410       420

              430       440       450       460       470        
pF1KE4 VKEEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLVSIGLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VKEEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLVSIGLDC
              430       440       450       460       470        

>>CCDS46901.1 ABTB1 gene_id:80325|Hs108|chr3              (336 aa)
 initn: 2288 init1: 2288 opt: 2288  Z-score: 2014.9  bits: 381.7 E(32554): 6.6e-106
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 336 aa overlap (143-478:1-336)

            120       130       140       150       160       170  
pF1KE4 IHSDVVFVVHGKPFRVHRCVLGARSAYFANMLDTKWKGKSVVVLRHPLINPVAFGALLQY
                                     ::::::::::::::::::::::::::::::
CCDS46                               MLDTKWKGKSVVVLRHPLINPVAFGALLQY
                                             10        20        30

            180       190       200       210       220       230  
pF1KE4 LYTGRLDIGVEHVSDCERLAKQCQLWDLLSDLEAKCEKVSEFVASKPGTCVKVLTIEPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYTGRLDIGVEHVSDCERLAKQCQLWDLLSDLEAKCEKVSEFVASKPGTCVKVLTIEPPP
               40        50        60        70        80        90

            240       250       260       270       280       290  
pF1KE4 ADPRLREDMALLADCALPPELRGDLWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ADPRLREDMALLADCALPPELRGDLWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCG
              100       110       120       130       140       150

            300       310       320       330       340       350  
pF1KE4 RSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDV
              160       170       180       190       200       210

            360       370       380       390       400       410  
pF1KE4 LSVADMYLLPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LSVADMYLLPGLKRLCGRSLAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLV
              220       230       240       250       260       270

            420       430       440       450       460       470  
pF1KE4 EREDFVEAVKEEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EREDFVEAVKEEAAAVAARQETDSIPLVDDIRFHVASTVQTYSAIEEAQQRLRALEDLLV
              280       290       300       310       320       330

             
pF1KE4 SIGLDC
       ::::::
CCDS46 SIGLDC
             




478 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:54:00 2016 done: Sun Nov  6 01:54:00 2016
 Total Scan time:  3.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]