Result of FASTA (ccds) for
pFN21AE4101
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4101, 471 aa
1>>>pF1KE4101 471 - 471 aa - 471 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4398+/-0.00124; mu= 16.7545+/- 0.075
mean_var=64.8528+/-13.094, 0's: 0 Z-trim(99.6): 48 B-trim: 0 in 0/47
Lambda= 0.159261
statistics sampled from 5767 (5806) to 5767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.531), E-opt: 0.2 (0.178), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS41624.1 UEVLD gene_id:55293|Hs108|chr11 ( 471) 3037 707.3 8.5e-204
CCDS58124.1 UEVLD gene_id:55293|Hs108|chr11 ( 449) 2615 610.4 1.3e-174
CCDS7843.1 UEVLD gene_id:55293|Hs108|chr11 ( 379) 2448 572.0 3.9e-163
CCDS58122.1 UEVLD gene_id:55293|Hs108|chr11 ( 341) 2186 511.7 4.7e-145
CCDS58123.1 UEVLD gene_id:55293|Hs108|chr11 ( 357) 2026 475.0 5.7e-134
CCDS73266.1 UEVLD gene_id:55293|Hs108|chr11 ( 215) 1364 322.8 2.2e-88
CCDS7842.1 TSG101 gene_id:7251|Hs108|chr11 ( 390) 566 139.5 5.9e-33
CCDS7841.1 LDHAL6A gene_id:160287|Hs108|chr11 ( 332) 542 134.0 2.3e-31
CCDS8691.1 LDHB gene_id:3945|Hs108|chr12 ( 334) 514 127.6 2e-29
CCDS10171.1 LDHAL6B gene_id:92483|Hs108|chr15 ( 381) 505 125.5 9.5e-29
CCDS53611.1 LDHA gene_id:3939|Hs108|chr11 ( 241) 499 124.1 1.7e-28
CCDS53610.1 LDHA gene_id:3939|Hs108|chr11 ( 274) 499 124.1 1.9e-28
CCDS7839.1 LDHA gene_id:3939|Hs108|chr11 ( 332) 500 124.4 1.9e-28
CCDS53609.1 LDHA gene_id:3939|Hs108|chr11 ( 361) 500 124.4 2e-28
CCDS58125.1 UEVLD gene_id:55293|Hs108|chr11 ( 199) 486 121.0 1.1e-27
CCDS7840.1 LDHC gene_id:3948|Hs108|chr11 ( 332) 487 121.4 1.5e-27
CCDS44549.1 LDHA gene_id:3939|Hs108|chr11 ( 274) 313 81.3 1.4e-15
>>CCDS41624.1 UEVLD gene_id:55293|Hs108|chr11 (471 aa)
initn: 3037 init1: 3037 opt: 3037 Z-score: 3772.3 bits: 707.3 E(32554): 8.5e-204
Smith-Waterman score: 3037; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
370 380 390 400 410 420
430 440 450 460 470
pF1KE4 INSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 INSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
430 440 450 460 470
>>CCDS58124.1 UEVLD gene_id:55293|Hs108|chr11 (449 aa)
initn: 2880 init1: 2604 opt: 2615 Z-score: 3248.6 bits: 610.4 E(32554): 1.3e-174
Smith-Waterman score: 2840; 95.3% identity (95.3% similar) in 471 aa overlap (1-471:1-449)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTY------------------
10 20 30 40
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----GNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
50 60 70 80 90
130 140 150 160 170 180
pF1KE4 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
340 350 360 370 380 390
430 440 450 460 470
pF1KE4 INSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 INSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
400 410 420 430 440
>>CCDS7843.1 UEVLD gene_id:55293|Hs108|chr11 (379 aa)
initn: 2448 init1: 2448 opt: 2448 Z-score: 3042.3 bits: 572.0 E(32554): 3.9e-163
Smith-Waterman score: 2448; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
:::::::::::::::
CCDS78 EEVVSHTSQVQLSNRDIMI
370
>>CCDS58122.1 UEVLD gene_id:55293|Hs108|chr11 (341 aa)
initn: 2186 init1: 2186 opt: 2186 Z-score: 2717.7 bits: 511.7 E(32554): 4.7e-145
Smith-Waterman score: 2186; 100.0% identity (100.0% similar) in 337 aa overlap (39-375:1-337)
10 20 30 40 50 60
pF1KE4 RRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTY
::::::::::::::::::::::::::::::
CCDS58 MDTYVFKDSSQKDLLNFTGTIPVMYQGNTY
10 20 30
70 80 90 100 110 120
pF1KE4 NIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGLI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE4 KEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 GGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSASAHSKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSASAHSKV
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 VIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLST
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 FPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEVVSHTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEVVSHTS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 QVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLS
:::::::
CCDS58 QVQLSNRDIMI
340
>>CCDS58123.1 UEVLD gene_id:55293|Hs108|chr11 (357 aa)
initn: 2291 init1: 2015 opt: 2026 Z-score: 2518.7 bits: 475.0 E(32554): 5.7e-134
Smith-Waterman score: 2251; 94.1% identity (94.1% similar) in 375 aa overlap (1-375:1-353)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTY------------------
10 20 30 40
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----GNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
50 60 70 80 90
130 140 150 160 170 180
pF1KE4 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE4 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE4 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE4 EEVVSHTSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYD
:::::::::::::::
CCDS58 EEVVSHTSQVQLSNRDIMI
340 350
>>CCDS73266.1 UEVLD gene_id:55293|Hs108|chr11 (215 aa)
initn: 1364 init1: 1364 opt: 1364 Z-score: 1700.1 bits: 322.8 E(32554): 2.2e-88
Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
::::::::::::::::::::::::
CCDS73 TVNKITVVGGGELGIACTLAISAKVESRSVTQAGV
190 200 210
>>CCDS7842.1 TSG101 gene_id:7251|Hs108|chr11 (390 aa)
initn: 550 init1: 550 opt: 566 Z-score: 705.2 bits: 139.5 E(32554): 5.9e-33
Smith-Waterman score: 566; 49.7% identity (80.0% similar) in 165 aa overlap (8-167:8-172)
10 20 30 40 50 60
pF1KE4 MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
:.....:::.:::::.: :: ... .: .:.:::.:.:...:.:.:::::
CCDS78 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
: :.:::::::: .:.::..:. :::::.:::..: : .::::::.:.::::::..:.::
CCDS78 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 KSVIVGLIKEMIAKFQEELPMYS--LSSSDEARQVDL---LAYIAKITEGVSDTNSKSWA
.: ..:::. ::. : .: :..: .:.: :. .:. . :.:
CCDS78 QSDLLGLIQVMIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 NHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE
CCDS78 NPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLRW
190 200 210 220 230 240
>>CCDS7841.1 LDHAL6A gene_id:160287|Hs108|chr11 (332 aa)
initn: 812 init1: 337 opt: 542 Z-score: 676.5 bits: 134.0 E(32554): 2.3e-31
Smith-Waterman score: 796; 40.8% identity (73.3% similar) in 326 aa overlap (172-471:10-332)
150 160 170 180 190 200
pF1KE4 YSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVVGGGELGIACTLAI
:..:..: :::..:: : .:.::...:
CCDS78 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISI
10 20 30
210 220 230 240 250
pF1KE4 SAKGIADRLVLLDLSEGT-KGATMDLE----IFNLPNVEISKDLSASAHSKVVIFTVNS-
::..:.:::.:..:: :: ::::. ....::. ::: ..:.:..::.:...
CCDS78 LLKGLSDELVLVDVDEGKLKGETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGAR
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE4 LGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVI
.... ::.:: ::..:. ..: . .:: : ::....::.:.:::.:::: :: ::::
CCDS78 QKKGETRLDLVQRNVSIFKLMIPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVI
100 110 120 130 140 150
320 330 340 350 360
pF1KE4 GIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSG-----------QEEVV
: :::::: :..:.: . : .. . . ..::.:...: .::: . ..
CCDS78 GSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIG
160 170 180 190 200 210
370 380 390 400 410
pF1KE4 SHTSQVQLSN-------RAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKG
. . : : ..:....:: ::...:::::...::..: ..:: ::.:.::
CCDS78 TDKDPEQWENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKG
220 230 240 250 260 270
420 430 440 450 460 470
pF1KE4 YYDINSEVFLSLPCILGTNGVSEVIKT--TLKEDTVTEKLQSSASSIHSLQQQLKL
: :: ..:::.::::: ::....::. ::.:.. ::.:: .. .:..:::
CCDS78 LYGINEDIFLSVPCILGENGITDLIKVKLTLEEEAC---LQKSAETLWEIQKELKL
280 290 300 310 320 330
>>CCDS8691.1 LDHB gene_id:3945|Hs108|chr12 (334 aa)
initn: 693 init1: 339 opt: 514 Z-score: 641.6 bits: 127.6 E(32554): 2e-29
Smith-Waterman score: 764; 40.4% identity (75.5% similar) in 319 aa overlap (178-470:15-332)
150 160 170 180 190 200
pF1KE4 DEARQVDLLAYIAKITEGVSDTNSKSWANHENKTV--NKITVVGGGELGIACTLAISAKG
:. :: ::::::: :..:.::...: .:.
CCDS86 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKS
10 20 30 40
210 220 230 240 250
pF1KE4 IADRLVLLD-LSEGTKGATMDLE----IFNLPNVEISKDLSASAHSKVVIFTVN-SLGSS
.::.:.:.: : . :: :::. ... :.. .:: :..:.::.:. :.. .
CCDS86 LADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEG
50 60 70 80 90 100
260 270 280 290 300 310
pF1KE4 QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGC
.: :..:: ::..:. ..: . .:: ...:.:.::.:.:::::::: .: .:::: ::
CCDS86 ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGC
110 120 130 140 150 160
320 330 340 350 360
pF1KE4 NLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSG--------QE---EVVSHTS
:::: :..:.... : . :. . :..::.:...: .::: :: :. . ..
CCDS86 NLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDND
170 180 190 200 210 220
370 380 390 400 410 420
pF1KE4 -----QVQ--LSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDI
.:. . . :.:....:: .:..::::::...:...: ...: ::...::.: :
CCDS86 SENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGI
230 240 250 260 270 280
430 440 450 460 470
pF1KE4 NSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
..::::::::::.. :.. ::. ::.: :.. :..::... ..:..::
CCDS86 ENEVFLSLPCILNARGLTSVINQKLKDDEVAQ-LKKSADTLWDIQKDLKDL
290 300 310 320 330
>>CCDS10171.1 LDHAL6B gene_id:92483|Hs108|chr15 (381 aa)
initn: 708 init1: 331 opt: 505 Z-score: 629.6 bits: 125.5 E(32554): 9.5e-29
Smith-Waterman score: 761; 38.3% identity (72.8% similar) in 313 aa overlap (183-471:70-381)
160 170 180 190 200 210
pF1KE4 VDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVL
.:....: : .:.::...: ::..:.:.:
CCDS10 GTWLFTPVSKMATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELAL
40 50 60 70 80 90
220 230 240 250 260
pF1KE4 LDLSEGT-KGATMDLE----IFNLPNVEISKDLSASAHSKVVIFTVNSLG-SSQSYLDVV
.::.: :: ::::. . ..::. ::: ..:.:..::.:... .... :..:
CCDS10 VDLDEDKLKGETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLV
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE4 QSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRL
: :: .:. .. .. .:: : :...:.::.:.:::.::::.:: ::.:: :::::. :.
CCDS10 QRNVAIFKLMISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARF
160 170 180 190 200 210
330 340 350 360 370
pF1KE4 QYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSG-----------QEEVVSHTSQVQLSN-
...: . : .. . . :..::.:...: .::: . .. . . : .:
CCDS10 RFLIGQKLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNV
220 230 240 250 260 270
380 390 400 410 420
pF1KE4 ------RAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLS
:.:....:: ::..::::::...::..: ...: ::.. :: : :. :::::
CCDS10 HKEVTATAYEIIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLS
280 290 300 310 320 330
430 440 450 460 470
pF1KE4 LPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
.::::: ::....:: : . .:..::... .:..:::
CCDS10 IPCILGENGITNLIKIKLTPEE-EAHLKKSAKTLWEIQNKLKL
340 350 360 370 380
471 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:12:41 2016 done: Mon Nov 7 18:12:41 2016
Total Scan time: 2.870 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]