FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4078, 412 aa
  1>>>pF1KE4078 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1873+/-0.000815; mu= 12.5219+/- 0.048
 mean_var=101.0174+/-21.636, 0's: 0 Z-trim(109.4): 98  B-trim: 0 in 0/51
 Lambda= 0.127607
 statistics sampled from 10714 (10832) to 10714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.333), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS31271.1 FBXW4 gene_id:6468|Hs108|chr10         ( 412) 2858 536.8 1.4e-152


>>CCDS31271.1 FBXW4 gene_id:6468|Hs108|chr10              (412 aa)
 initn: 2858 init1: 2858 opt: 2858  Z-score: 2852.6  bits: 536.8 E(32554): 1.4e-152
Smith-Waterman score: 2858; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KE4 MAAAAGEEEEEEEAARESAARPAAGPALWRLPEELLLLICSYLDMRALGRLAQVCRWLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAAAGEEEEEEEAARESAARPAAGPALWRLPEELLLLICSYLDMRALGRLAQVCRWLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 FTSCDLLWRRIARASLNSGFTRLGTDLMTSVPVKERVKVSQNWRLGRCREGILLKWRCSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTSCDLLWRRIARASLNSGFTRLGTDLMTSVPVKERVKVSQNWRLGRCREGILLKWRCSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 MPWMQLEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVCHFVLANSHIVSAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPWMQLEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVCHFVLANSHIVSAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 GDGKIGIHKIHSTFTVKYSAHEQEVNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GDGKIGIHKIHSTFTVKYSAHEQEVNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGV
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KE4 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDFQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLHVLDFQNP
              370       380       390       400       410  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:58:47 2016 done: Sun Nov  6 03:58:47 2016
 Total Scan time:  3.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]