FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4072, 379 aa
  1>>>pF1KE4072 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8208+/-0.00103; mu= -13.1091+/- 0.062
 mean_var=608.1524+/-124.573, 0's: 0 Z-trim(119.2): 18  B-trim: 204 in 1/54
 Lambda= 0.052008
 statistics sampled from 20335 (20351) to 20335 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.625), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS45661.1 C17orf96 gene_id:100170841|Hs108|chr17 ( 379) 2772 221.9 7.4e-58


>>CCDS45661.1 C17orf96 gene_id:100170841|Hs108|chr17      (379 aa)
 initn: 2772 init1: 2772 opt: 2772  Z-score: 1152.2  bits: 221.9 E(32554): 7.4e-58
Smith-Waterman score: 2772; 99.7% identity (99.7% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE4 METLCPAPRLAVPASPRGSPCSPTPRKPCRGTQEFSPLCLRALAFCALAKPRASSLGPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 METLCPAPRLAVPASPRGSPCSPTPRKPCRGTQEFSPLCLRALAFCALAKPRASSLGPGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GELAARSPVLRGPQAPLRPGGWAPDGLKHLWAPTGRLGVPNTAAGEDADVAACPRRGEEE
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 GELAARSPVLRGPQAPLRPGGWAPDGLKHLWAPTGRPGVPNTAAGEDADVAACPRRGEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EGGGGFPHFGVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EGGGGFPHFGVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAASPSTASPAPAAPGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAASPSTASPAPAAPGDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 RQEHFDRLIRRSKLWCYAKGFALDTPSLRRGPERPPAKGPARGAAKKRRLPAPPPRTAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RQEHFDRLIRRSKLWCYAKGFALDTPSLRRGPERPPAKGPARGAAKKRRLPAPPPRTAQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 RRPAPTLPTTSTFSLLNCFPCPPALVVGEDGDLKPASSLRLQGDSKPPPAHPLWRWQMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RRPAPTLPTTSTFSLLNCFPCPPALVVGEDGDLKPASSLRLQGDSKPPPAHPLWRWQMGG
              310       320       330       340       350       360

              370         
pF1KE4 PAVPEPPGLKFWGINMDES
       :::::::::::::::::::
CCDS45 PAVPEPPGLKFWGINMDES
              370         




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:13:46 2016 done: Sun Nov  6 04:13:47 2016
 Total Scan time:  3.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]