FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4069, 368 aa
  1>>>pF1KE4069 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5986+/-0.00075; mu= 5.1313+/- 0.046
 mean_var=195.5856+/-39.407, 0's: 0 Z-trim(116.6): 7  B-trim: 0 in 0/51
 Lambda= 0.091708
 statistics sampled from 17203 (17210) to 17203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.529), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS1539.1 FBXO28 gene_id:23219|Hs108|chr1         ( 368) 2392 327.9 8.8e-90
CCDS44320.1 FBXO28 gene_id:23219|Hs108|chr1        ( 179) 1166 165.4 3.4e-41


>>CCDS1539.1 FBXO28 gene_id:23219|Hs108|chr1              (368 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 1725.4  bits: 327.9 E(32554): 8.8e-90
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK
              310       320       330       340       350       360

               
pF1KE4 SKRLRNRK
       ::::::::
CCDS15 SKRLRNRK
               

>>CCDS44320.1 FBXO28 gene_id:23219|Hs108|chr1             (179 aa)
 initn: 1315 init1: 1166 opt: 1166  Z-score: 853.1  bits: 165.4 E(32554): 3.4e-41
Smith-Waterman score: 1166; 97.7% identity (98.9% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::  :..   
CCDS44 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP 
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:00:04 2016 done: Sun Nov  6 04:00:04 2016
 Total Scan time:  3.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]