FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4068, 355 aa
  1>>>pF1KE4068 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3718+/-0.000632; mu= 17.0057+/- 0.038
 mean_var=74.4398+/-14.794, 0's: 0 Z-trim(111.6): 23  B-trim: 0 in 0/52
 Lambda= 0.148652
 statistics sampled from 12520 (12540) to 12520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS32365.1 SPSB3 gene_id:90864|Hs108|chr16        ( 355) 2496 544.0  7e-155


>>CCDS32365.1 SPSB3 gene_id:90864|Hs108|chr16             (355 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 2894.1  bits: 544.0 E(32554): 7e-155
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KE4 MARRPRNSRAWHFVLSAARRDADARAVALAGSTNWGYDSDGQHSDSDSDPEYSTLPPSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MARRPRNSRAWHFVLSAARRDADARAVALAGSTNWGYDSDGQHSDSDSDPEYSTLPPSIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SAVPVTGESFCDCAGQSEASFCSSLHSAHRGRDCRCGEEDEYFDWVWDDLNKSSATLLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SAVPVTGESFCDCAGQSEASFCSSLHSAHRGRDCRCGEEDEYFDWVWDDLNKSSATLLSC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 DNRKVSFHMEYSCGTAAIRGTKELGEGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DNRKVSFHMEYSCGTAAIRGTKELGEGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GVAATKLQNKRFYPMVCSTAARSSMKVTRSCASATSLQYLCCHRLRQLRPDSGDTLEGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GVAATKLQNKRFYPMVCSTAARSSMKVTRSCASATSLQYLCCHRLRQLRPDSGDTLEGLP
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KE4 LPPGLKQVLHNKLGWVLSMSCSRRKAPVSDPQAATSAHPSSREPRPCQRKRCRRT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPPGLKQVLHNKLGWVLSMSCSRRKAPVSDPQAATSAHPSSREPRPCQRKRCRRT
              310       320       330       340       350     




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:32:15 2016 done: Sun Nov  6 03:32:15 2016
 Total Scan time:  2.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]