Result of FASTA (omim) for
pFN21AE4066
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4066, 346 aa
1>>>pF1KE4066 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5393+/-0.000296; mu= 10.2236+/- 0.019
mean_var=199.8510+/-40.052, 0's: 0 Z-trim(124.3): 36 B-trim: 0 in 0/59
Lambda= 0.090724
statistics sampled from 45623 (45660) to 45623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.535), width: 16
Scan time: 9.390
The best scores are: opt bits E(85289)
NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 2433 329.9 4.9e-90
NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 1194 167.9 3.6e-41
NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 1034 146.9 7.1e-35
NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 264 46.0 0.00012
NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 264 46.0 0.00012
XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 264 46.0 0.00012
XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 264 46.0 0.00012
XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 258 45.5 0.00034
XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 258 45.5 0.00034
XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 258 45.5 0.00034
NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 258 45.5 0.00034
XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 258 45.5 0.00034
XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 258 45.5 0.00034
XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 256 45.2 0.0004
NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 247 43.7 0.00056
XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 247 43.7 0.00057
XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 247 43.7 0.00057
XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 247 43.7 0.00058
NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 247 43.7 0.00058
NP_848545 (OMIM: 613333) E3 ubiquitin-protein liga ( 253) 229 41.3 0.0027
XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 154) 215 39.3 0.0069
>>NP_612405 (OMIM: 613336) E3 ubiquitin-protein ligase M (346 aa)
initn: 2433 init1: 2433 opt: 2433 Z-score: 1737.5 bits: 329.9 E(85289): 4.9e-90
Smith-Waterman score: 2433; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP
250 260 270 280 290 300
310 320 330 340
pF1KE4 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
::::::::::::::::::::::::::::::::::::::::::::::
NP_612 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
310 320 330 340
>>NP_065865 (OMIM: 608208) E3 ubiquitin-protein ligase M (410 aa)
initn: 1447 init1: 1174 opt: 1194 Z-score: 860.2 bits: 167.9 E(85289): 3.6e-41
Smith-Waterman score: 1367; 58.3% identity (70.7% similar) in 386 aa overlap (1-346:37-410)
10 20 30
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQP
.:: : ::..:.::...: :: : :
NP_065 GLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLR---RPPQAPLP
10 20 30 40 50 60
40 50 60 70 80
pF1KE4 RGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPP-----
: : : . : : . : :: ..: .:: : ::: ::
NP_065 MHGDPQPPGLAA-NNTLPALGAGGWAGWRG--PRE--VVG-REPPPVPPPPPLPPSSVED
70 80 90 100 110
90 100 110 120
pF1KE4 ------LPPPGAL---------------DALSLSSSLDSGLRTPQCRICFQGPEQGELLS
::..: : ::.::::::.::: :::::::::::::::
NP_065 DWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLS
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE4 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQ
::::::::.::::::::.:::::: :::::::.::.:.::::::::::::::::::::::
NP_065 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE4 IAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSS
.:: .::::::.:::::::::..::::.:::::::::::::::::::::::::::::: :
NP_065 VAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPS
240 250 260 270 280 290
250 260 270 280 290
pF1KE4 VYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTG----PTS----GAT
:::::::::::::::::::::::::. . .:: ...::.: . :.: ..:
NP_065 VYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGG---RTNPRTSSSTQANIPSSEEETAGT
300 310 320 330 340 350
300 310 320 330 340
pF1KE4 SRP---PAAQRMRTLLP---QRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
: :: . : ..:.:::::.:..::: . :: :.::.:::::::
NP_065 PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
360 370 380 390 400 410
>>NP_001096032 (OMIM: 613338) E3 ubiquitin-protein ligas (402 aa)
initn: 1103 init1: 923 opt: 1034 Z-score: 747.1 bits: 146.9 E(85289): 7.1e-35
Smith-Waterman score: 1037; 48.0% identity (69.0% similar) in 329 aa overlap (19-346:102-402)
10 20 30 40
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGG-GCGWAPFAGCS
.: : :: :. ...:: : . : .:
NP_001 VAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEG-PRRLPEAAAAKGGPGESEAGAGGER
80 90 100 110 120 130
50 60 70 80 90 100
pF1KE4 TRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT
: : ::. : . . .: . ::: :.
NP_001 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPI---------------------
140 150 160
110 120 130 140 150 160
pF1KE4 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK
:.::::: ::::::.::::::::: ::: ::..::::::::.:::: ..:.:.::. :
NP_001 --CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMK
170 180 190 200 210 220
170 180 190 200 210 220
pF1KE4 NPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMY
.: :::.::.:..::::. :..::::::.::..::.::..:: : :::.:.:::::::::
NP_001 QPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMY
230 240 250 260 270 280
230 240 250 260 270 280
pF1KE4 GFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNS
::::.::::::.:::..:::.::::.::: .: ::::::. :: .. :.:. .
NP_001 GFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDI----EESSRGESSTSRT
290 300 310 320 330 340
290 300 310 320 330 340
pF1KE4 RTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
: .. .: . . : .:::..:::....:: . : ..:. :::::::.:
NP_001 LWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
350 360 370 380 390 400
>>NP_001002266 (OMIM: 613335) E3 ubiquitin-protein ligas (291 aa)
initn: 159 init1: 159 opt: 264 Z-score: 204.1 bits: 46.0 E(85289): 0.00012
Smith-Waterman score: 264; 28.2% identity (56.9% similar) in 202 aa overlap (75-267:51-244)
50 60 70 80 90 100
pF1KE4 GCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSG
.:: ::. : : ....: .: :.
NP_001 VYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGS--PPSASAPAP--VSSFSRTSITPSS
30 40 50 60 70
110 120 130 140 150 160
pF1KE4 LRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLA
:::: .: ... :..::.: ::.. .:: :: .::. . :::: ::. .
NP_001 QDI--CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIM
80 90 100 110 120 130
170 180 190 200 210 220
pF1KE4 ISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQI
. .:: .:. ...: :. .: : .. .. . : .. .. .:. .: :
NP_001 ETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGI
140 150 160 170 180 190
230 240 250 260 270
pF1KE4 C-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAG
. .. . :: :: :... .:: ...:: .: :. : : .:
NP_001 LEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEK
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE4 GGTAGKSGPRNSRTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHS
NP_001 SPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
260 270 280 290
>>NP_659458 (OMIM: 613335) E3 ubiquitin-protein ligase M (291 aa)
initn: 159 init1: 159 opt: 264 Z-score: 204.1 bits: 46.0 E(85289): 0.00012
Smith-Waterman score: 264; 28.2% identity (56.9% similar) in 202 aa overlap (75-267:51-244)
50 60 70 80 90 100
pF1KE4 GCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSG
.:: ::. : : ....: .: :.
NP_659 VYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGS--PPSASAPAP--VSSFSRTSITPSS
30 40 50 60 70
110 120 130 140 150 160
pF1KE4 LRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLA
:::: .: ... :..::.: ::.. .:: :: .::. . :::: ::. .
NP_659 QDI--CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIM
80 90 100 110 120 130
170 180 190 200 210 220
pF1KE4 ISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQI
. .:: .:. ...: :. .: : .. .. . : .. .. .:. .: :
NP_659 ETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGI
140 150 160 170 180 190
230 240 250 260 270
pF1KE4 C-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAG
. .. . :: :: :... .:: ...:: .: :. : : .:
NP_659 LEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEK
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE4 GGTAGKSGPRNSRTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHS
NP_659 SPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
260 270 280 290
>>XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (291 aa)
initn: 159 init1: 159 opt: 264 Z-score: 204.1 bits: 46.0 E(85289): 0.00012
Smith-Waterman score: 264; 28.2% identity (56.9% similar) in 202 aa overlap (75-267:51-244)
50 60 70 80 90 100
pF1KE4 GCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSG
.:: ::. : : ....: .: :.
XP_016 VYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGS--PPSASAPAP--VSSFSRTSITPSS
30 40 50 60 70
110 120 130 140 150 160
pF1KE4 LRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLA
:::: .: ... :..::.: ::.. .:: :: .::. . :::: ::. .
XP_016 QDI--CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIM
80 90 100 110 120 130
170 180 190 200 210 220
pF1KE4 ISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQI
. .:: .:. ...: :. .: : .. .. . : .. .. .:. .: :
XP_016 ETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGI
140 150 160 170 180 190
230 240 250 260 270
pF1KE4 C-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAG
. .. . :: :: :... .:: ...:: .: :. : : .:
XP_016 LEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEK
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE4 GGTAGKSGPRNSRTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHS
XP_016 SPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
260 270 280 290
>>XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (291 aa)
initn: 159 init1: 159 opt: 264 Z-score: 204.1 bits: 46.0 E(85289): 0.00012
Smith-Waterman score: 264; 28.2% identity (56.9% similar) in 202 aa overlap (75-267:51-244)
50 60 70 80 90 100
pF1KE4 GCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSG
.:: ::. : : ....: .: :.
XP_011 VYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGS--PPSASAPAP--VSSFSRTSITPSS
30 40 50 60 70
110 120 130 140 150 160
pF1KE4 LRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLA
:::: .: ... :..::.: ::.. .:: :: .::. . :::: ::. .
XP_011 QDI--CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIM
80 90 100 110 120 130
170 180 190 200 210 220
pF1KE4 ISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQI
. .:: .:. ...: :. .: : .. .. . : .. .. .:. .: :
XP_011 ETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGI
140 150 160 170 180 190
230 240 250 260 270
pF1KE4 C-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAG
. .. . :: :: :... .:: ...:: .: :. : : .:
XP_011 LEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEK
200 210 220 230 240 250
280 290 300 310 320 330
pF1KE4 GGTAGKSGPRNSRTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHS
XP_011 SPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
260 270 280 290
>>XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 205 init1: 159 opt: 258 Z-score: 196.3 bits: 45.5 E(85289): 0.00034
Smith-Waterman score: 264; 27.3% identity (55.1% similar) in 245 aa overlap (39-267:295-526)
10 20 30 40 50 60
pF1KE4 FLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAG-CSTRDGDGDE-EEYYGSEPRAR
: : : :: . :: : :. ... ..:
XP_005 LSHGLSASSLHRFHELESCAARLHTAKSSSGLAGSMGFCSDEMGDDDVFEDSTSAKLKSR
270 280 290 300 310 320
70 80 90 100 110 120
pF1KE4 GLAGD--KEPRAGPLPPPAP---PLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQG
: . . . . : :.: ::: .. .: :... :::: .: ...
XP_005 VLRAPLCSTEKDSDLDCPSPFSEKLPP---ISPVSTSGDV--------CRICHCEGDDES
330 340 350 360 370
130 140 150 160 170
pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTV
:..::.: ::.. .:: :: .::. . :::: ::. . . .:: .:. ...:
XP_005 PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KE4 IEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG--
:. .: : .. .. . : .. .. .:. .: : . .. . :: ::
XP_005 SERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFT
440 450 460 470 480 490
240 250 260 270 280 290
pF1KE4 ---LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPT
:... .:: ...:: .: :. : : .:
XP_005 GGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENKHGYGIC
500 510 520 530 540 550
300 310 320 330 340
pF1KE4 SGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
XP_005 HSDTNSSCCTEPEDTGAEIIHV
560 570
>>XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 205 init1: 159 opt: 258 Z-score: 196.3 bits: 45.5 E(85289): 0.00034
Smith-Waterman score: 264; 27.3% identity (55.1% similar) in 245 aa overlap (39-267:295-526)
10 20 30 40 50 60
pF1KE4 FLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAG-CSTRDGDGDE-EEYYGSEPRAR
: : : :: . :: : :. ... ..:
XP_011 LSHGLSASSLHRFHELESCAARLHTAKSSSGLAGSMGFCSDEMGDDDVFEDSTSAKLKSR
270 280 290 300 310 320
70 80 90 100 110 120
pF1KE4 GLAGD--KEPRAGPLPPPAP---PLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQG
: . . . . : :.: ::: .. .: :... :::: .: ...
XP_011 VLRAPLCSTEKDSDLDCPSPFSEKLPP---ISPVSTSGDV--------CRICHCEGDDES
330 340 350 360 370
130 140 150 160 170
pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTV
:..::.: ::.. .:: :: .::. . :::: ::. . . .:: .:. ...:
XP_011 PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KE4 IEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG--
:. .: : .. .. . : .. .. .:. .: : . .. . :: ::
XP_011 SERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFT
440 450 460 470 480 490
240 250 260 270 280 290
pF1KE4 ---LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPT
:... .:: ...:: .: :. : : .:
XP_011 GGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENKHGYGIC
500 510 520 530 540 550
300 310 320 330 340
pF1KE4 SGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
XP_011 HSDTNSSCCTEPEDTGAEIIHV
560 570
>>XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 205 init1: 159 opt: 258 Z-score: 196.3 bits: 45.5 E(85289): 0.00034
Smith-Waterman score: 264; 27.3% identity (55.1% similar) in 245 aa overlap (39-267:295-526)
10 20 30 40 50 60
pF1KE4 FLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAG-CSTRDGDGDE-EEYYGSEPRAR
: : : :: . :: : :. ... ..:
XP_011 LSHGLSASSLHRFHELESCAARLHTAKSSSGLAGSMGFCSDEMGDDDVFEDSTSAKLKSR
270 280 290 300 310 320
70 80 90 100 110 120
pF1KE4 GLAGD--KEPRAGPLPPPAP---PLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQG
: . . . . : :.: ::: .. .: :... :::: .: ...
XP_011 VLRAPLCSTEKDSDLDCPSPFSEKLPP---ISPVSTSGDV--------CRICHCEGDDES
330 340 350 360 370
130 140 150 160 170
pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTV
:..::.: ::.. .:: :: .::. . :::: ::. . . .:: .:. ...:
XP_011 PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KE4 IEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG--
:. .: : .. .. . : .. .. .:. .: : . .. . :: ::
XP_011 SERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFT
440 450 460 470 480 490
240 250 260 270 280 290
pF1KE4 ---LIIHEGSSVY-RIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPT
:... .:: ...:: .: :. : : .:
XP_011 GGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENKHGYGIC
500 510 520 530 540 550
300 310 320 330 340
pF1KE4 SGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
XP_011 HSDTNSSCCTEPEDTGAEIIHV
560 570
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:14:23 2016 done: Sun Nov 6 04:14:24 2016
Total Scan time: 9.390 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]