Result of FASTA (ccds) for
pFN21AE4066
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4066, 346 aa
1>>>pF1KE4066 346 - 346 aa - 346 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5695+/-0.000734; mu= 10.0924+/- 0.045
mean_var=195.2640+/-38.702, 0's: 0 Z-trim(116.9): 15 B-trim: 0 in 0/56
Lambda= 0.091783
statistics sampled from 17593 (17606) to 17593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.541), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 ( 346) 2433 333.6 1.5e-91
CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 ( 410) 1194 169.6 4.2e-42
CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 ( 402) 1034 148.4 9.8e-36
>>CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 (346 aa)
initn: 2433 init1: 2433 opt: 2433 Z-score: 1757.0 bits: 333.6 E(32554): 1.5e-91
Smith-Waterman score: 2433; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP
250 260 270 280 290 300
310 320 330 340
pF1KE4 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
310 320 330 340
>>CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 (410 aa)
initn: 1447 init1: 1174 opt: 1194 Z-score: 869.4 bits: 169.6 E(32554): 4.2e-42
Smith-Waterman score: 1367; 58.3% identity (70.7% similar) in 386 aa overlap (1-346:37-410)
10 20 30
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQP
.:: : ::..:.::...: :: : :
CCDS33 GLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLR---RPPQAPLP
10 20 30 40 50 60
40 50 60 70 80
pF1KE4 RGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPP-----
: : : . : : . : :: ..: .:: : ::: ::
CCDS33 MHGDPQPPGLAA-NNTLPALGAGGWAGWRG--PRE--VVG-REPPPVPPPPPLPPSSVED
70 80 90 100 110
90 100 110 120
pF1KE4 ------LPPPGAL---------------DALSLSSSLDSGLRTPQCRICFQGPEQGELLS
::..: : ::.::::::.::: :::::::::::::::
CCDS33 DWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLS
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE4 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQ
::::::::.::::::::.:::::: :::::::.::.:.::::::::::::::::::::::
CCDS33 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE4 IAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSS
.:: .::::::.:::::::::..::::.:::::::::::::::::::::::::::::: :
CCDS33 VAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPS
240 250 260 270 280 290
250 260 270 280 290
pF1KE4 VYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTG----PTS----GAT
:::::::::::::::::::::::::. . .:: ...::.: . :.: ..:
CCDS33 VYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGG---RTNPRTSSSTQANIPSSEEETAGT
300 310 320 330 340 350
300 310 320 330 340
pF1KE4 SRP---PAAQRMRTLLP---QRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
: :: . : ..:.:::::.:..::: . :: :.::.:::::::
CCDS33 PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
360 370 380 390 400 410
>>CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 (402 aa)
initn: 1103 init1: 923 opt: 1034 Z-score: 755.0 bits: 148.4 E(32554): 9.8e-36
Smith-Waterman score: 1037; 48.0% identity (69.0% similar) in 329 aa overlap (19-346:102-402)
10 20 30 40
pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGG-GCGWAPFAGCS
.: : :: :. ...:: : . : .:
CCDS47 VAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEG-PRRLPEAAAAKGGPGESEAGAGGER
80 90 100 110 120 130
50 60 70 80 90 100
pF1KE4 TRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT
: : ::. : . . .: . ::: :.
CCDS47 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPI---------------------
140 150 160
110 120 130 140 150 160
pF1KE4 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK
:.::::: ::::::.::::::::: ::: ::..::::::::.:::: ..:.:.::. :
CCDS47 --CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMK
170 180 190 200 210 220
170 180 190 200 210 220
pF1KE4 NPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMY
.: :::.::.:..::::. :..::::::.::..::.::..:: : :::.:.:::::::::
CCDS47 QPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMY
230 240 250 260 270 280
230 240 250 260 270 280
pF1KE4 GFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNS
::::.::::::.:::..:::.::::.::: .: ::::::. :: .. :.:. .
CCDS47 GFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDI----EESSRGESSTSRT
290 300 310 320 330 340
290 300 310 320 330 340
pF1KE4 RTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
: .. .: . . : .:::..:::....:: . : ..:. :::::::.:
CCDS47 LWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
350 360 370 380 390 400
346 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:14:22 2016 done: Sun Nov 6 04:14:23 2016
Total Scan time: 2.870 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]