FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4060, 334 aa
  1>>>pF1KE4060 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5415+/-0.000304; mu= 15.4948+/- 0.019
 mean_var=80.3674+/-16.251, 0's: 0 Z-trim(118.2): 11  B-trim: 36 in 1/50
 Lambda= 0.143065
 statistics sampled from 30900 (30911) to 30900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.362), width:  16
 Scan time:  7.750

The best scores are:                                      opt bits E(85289)
NP_054747 (OMIM: 259720,607649) osteopetrosis-asso ( 334) 2239 471.3 1.2e-132


>>NP_054747 (OMIM: 259720,607649) osteopetrosis-associat  (334 aa)
 initn: 2239 init1: 2239 opt: 2239  Z-score: 2502.3  bits: 471.3 E(85289): 1.2e-132
Smith-Waterman score: 2239; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KE4 MEPGPTAAQRRCSLPPWLPLGLLLWSGLALGALPFGSSPHRVFHDLLSEQQLLEVEDLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MEPGPTAAQRRCSLPPWLPLGLLLWSGLALGALPFGSSPHRVFHDLLSEQQLLEVEDLSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SLLQGGGLGPLSLPPDLPDLDPECRELLLDFANSSAELTGCLVRSARPVRLCQTCYPLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SLLQGGGLGPLSLPPDLPDLDPECRELLLDFANSSAELTGCLVRSARPVRLCQTCYPLFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 QVVSKMDNISRAAGNTSESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 QVVSKMDNISRAAGNTSESQSCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEVCKNCREAYKTLSSLYSEMQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 ELSNSTVYFLNLFNHTLTCFEHNLQGNAHSLLQTKNYSEVCKNCREAYKTLSSLYSEMQK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFILFLPVVFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSVFILFLPVVFY
              250       260       270       280       290       300

              310       320       330    
pF1KE4 LSSFLHSEQKKRKLILPKRLKSSTSFANIQENSN
       ::::::::::::::::::::::::::::::::::
NP_054 LSSFLHSEQKKRKLILPKRLKSSTSFANIQENSN
              310       320       330    




334 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:15:34 2016 done: Sun Nov  6 04:15:35 2016
 Total Scan time:  7.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]