FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4056, 310 aa
  1>>>pF1KE4056 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0911+/-0.00071; mu= 9.7518+/- 0.043
 mean_var=145.9967+/-29.022, 0's: 0 Z-trim(115.3): 3  B-trim: 98 in 1/52
 Lambda= 0.106146
 statistics sampled from 15852 (15853) to 15852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.487), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS8092.1 ZFPL1 gene_id:7542|Hs108|chr11          ( 310) 2190 346.1 2.1e-95


>>CCDS8092.1 ZFPL1 gene_id:7542|Hs108|chr11               (310 aa)
 initn: 2190 init1: 2190 opt: 2190  Z-score: 1826.4  bits: 346.1 E(32554): 2.1e-95
Smith-Waterman score: 2190; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE4 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVANHAKCIVQSYLQWLQDSDYNPNCRLCNIPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVANHAKCIVQSYLQWLQDSDYNPNCRLCNIPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ASRETTRLVCYDLFHWACLNERAAQLPRNTAPAGYQCPSCNGPIFPPTNLAGPVASALRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ASRETTRLVCYDLFHWACLNERAAQLPRNTAPAGYQCPSCNGPIFPPTNLAGPVASALRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KLATVNWARAGLGLPLIDEVVSPEPEPLNTSDFSDWSSFNASSTPGPEEVDSASAAPAFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KLATVNWARAGLGLPLIDEVVSPEPEPLNTSDFSDWSSFNASSTPGPEEVDSASAAPAFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SQAPRPPASPGRPEQHTVIHMGNPEPLTHAPRKVYDTRDDDRTPGLHGDCDDDKYRRRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SQAPRPPASPGRPEQHTVIHMGNPEPLTHAPRKVYDTRDDDRTPGLHGDCDDDKYRRRPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LGWLARLLRSRAGSRKRPLTLLQRAGLLLLLGLLGFLALLALMSRLGRAAADSDPNLDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LGWLARLLRSRAGSRKRPLTLLQRAGLLLLLGLLGFLALLALMSRLGRAAADSDPNLDPL
              250       260       270       280       290       300

              310
pF1KE4 MNPHIRVGPS
       ::::::::::
CCDS80 MNPHIRVGPS
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:35:10 2016 done: Sun Nov  6 03:35:11 2016
 Total Scan time:  3.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]