Result of FASTA (omim) for
pFN21AE4053
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4053, 300 aa
1>>>pF1KE4053 300 - 300 aa - 300 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8797+/-0.000316; mu= 18.2538+/- 0.020
mean_var=71.1382+/-14.596, 0's: 0 Z-trim(116.9): 103 B-trim: 848 in 2/50
Lambda= 0.152063
statistics sampled from 28331 (28444) to 28331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.334), width: 16
Scan time: 8.350
The best scores are: opt bits E(85289)
XP_005270207 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300) 2026 453.2 2.8e-127
XP_016872120 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300) 2026 453.2 2.8e-127
XP_005270208 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300) 2026 453.2 2.8e-127
NP_077302 (OMIM: 610287) F-box/LRR-repeat protein ( 300) 2026 453.2 2.8e-127
XP_005270206 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 387) 2026 453.3 3.4e-127
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 287 71.9 2.6e-12
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 287 71.9 2.6e-12
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 287 71.9 2.8e-12
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 287 71.9 2.8e-12
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 272 68.7 3.1e-11
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 272 68.7 3.2e-11
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 272 68.7 3.3e-11
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 272 68.7 3.3e-11
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621) 272 68.7 3.3e-11
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701) 272 68.8 3.6e-11
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712) 272 68.8 3.7e-11
XP_016874365 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 387) 269 67.9 3.7e-11
XP_016874364 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 404) 269 67.9 3.8e-11
NP_689654 (OMIM: 609081) F-box/LRR-repeat protein ( 418) 269 67.9 3.9e-11
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404) 264 66.8 8.1e-11
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 264 66.8 8.6e-11
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441) 264 66.8 8.6e-11
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 264 66.8 9.1e-11
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 262 66.3 9.2e-11
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 262 66.3 9.2e-11
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355) 259 65.6 1.6e-10
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 254 64.7 4.8e-10
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 238 61.3 6.4e-09
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797) 238 61.3 7e-09
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584) 235 60.6 8.8e-09
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 235 60.7 1e-08
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 235 60.7 1e-08
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 235 60.7 1e-08
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 235 60.7 1e-08
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 235 60.7 1.1e-08
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792) 235 60.7 1.1e-08
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822) 235 60.7 1.1e-08
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825) 235 60.7 1.1e-08
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809) 234 60.5 1.3e-08
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783) 229 59.4 2.7e-08
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 223 57.7 3.7e-08
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 223 57.7 3.7e-08
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 223 57.7 3.7e-08
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 223 57.7 3.7e-08
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 223 57.7 3.7e-08
NP_005974 (OMIM: 601436) S-phase kinase-associated ( 424) 200 52.8 1.4e-06
NP_699181 (OMIM: 609082) F-box/LRR-repeat protein ( 479) 200 52.8 1.5e-06
XP_011512383 (OMIM: 601436) PREDICTED: S-phase kin ( 379) 198 52.3 1.8e-06
XP_011512385 (OMIM: 601436) PREDICTED: S-phase kin ( 255) 185 49.3 9.5e-06
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 185 49.5 1.4e-05
>>XP_005270207 (OMIM: 610287) PREDICTED: F-box/LRR-repea (300 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 2406.0 bits: 453.2 E(85289): 2.8e-127
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KE4 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
250 260 270 280 290 300
>>XP_016872120 (OMIM: 610287) PREDICTED: F-box/LRR-repea (300 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 2406.0 bits: 453.2 E(85289): 2.8e-127
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KE4 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
250 260 270 280 290 300
>>XP_005270208 (OMIM: 610287) PREDICTED: F-box/LRR-repea (300 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 2406.0 bits: 453.2 E(85289): 2.8e-127
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KE4 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
250 260 270 280 290 300
>>NP_077302 (OMIM: 610287) F-box/LRR-repeat protein 15 [ (300 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 2406.0 bits: 453.2 E(85289): 2.8e-127
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KE4 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLPHVLNRVPLRQLLRLQRVSRAFRSLVQLHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 GLRRFDAAQVGPQIPRAALARLLRDAEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LGGCGQLSRRALGALAEGCPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 DEAIVYLAQRRGAGLRSLSLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 AEYCPVLRSLRVRHCHHVAESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
250 260 270 280 290 300
>>XP_005270206 (OMIM: 610287) PREDICTED: F-box/LRR-repea (387 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 2404.5 bits: 453.3 E(85289): 3.4e-127
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:88-387)
10 20 30
pF1KE4 MEPPMEPSGGEQEPGAVRFLDLPWEDVLLP
::::::::::::::::::::::::::::::
XP_005 PGDAAKEAGLVRPLQGQSEKILLRTRNRQPMEPPMEPSGGEQEPGAVRFLDLPWEDVLLP
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE4 HVLNRVPLRQLLRLQRVSRAFRSLVQLHLAGLRRFDAAQVGPQIPRAALARLLRDAEGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HVLNRVPLRQLLRLQRVSRAFRSLVQLHLAGLRRFDAAQVGPQIPRAALARLLRDAEGLQ
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE4 ELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLAHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLAHC
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE4 DWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNANVGDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGAGLRSLSLAVNANVGDAA
240 250 260 270 280 290
220 230 240 250 260 270
pF1KE4 VQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHVAESSLSRLRKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHVAESSLSRLRKRG
300 310 320 330 340 350
280 290 300
pF1KE4 VDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::::::::::::::::::::::::::::::
XP_005 VDIDVEPPLHQALVLLQDMAGFAPFVNLQV
360 370 380
>>XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-repea (444 aa)
initn: 396 init1: 163 opt: 287 Z-score: 341.9 bits: 71.9 E(85289): 2.6e-12
Smith-Waterman score: 287; 30.6% identity (65.6% similar) in 160 aa overlap (116-268:141-300)
90 100 110 120 130 140
pF1KE4 AEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRL
:..:...:: .:. :.: ..:. ::.:.::
XP_011 RLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRL
120 130 140 150 160 170
150 160 170 180 190
pF1KE4 SLAHCDWVDGLALRGLADRCPALEELDLTACRQ-----LKDEAIVYLAQRRGA--GLRSL
.. : ... :. ... :: ::.::...: . : :: . :. .: ..: :
XP_011 EVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYL
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE4 SLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHV
... . : ... .: .: .: :: : :.:. ..:.: :. :: .. : : :. :
XP_011 DMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFV
240 250 260 270 280 290
260 270 280 290 300
pF1KE4 AESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
.. .: .. :
XP_011 SDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYL
300 310 320 330 340 350
>>NP_001265246 (OMIM: 605656) F-box/LRR-repeat protein 7 (444 aa)
initn: 396 init1: 163 opt: 287 Z-score: 341.9 bits: 71.9 E(85289): 2.6e-12
Smith-Waterman score: 287; 30.6% identity (65.6% similar) in 160 aa overlap (116-268:141-300)
90 100 110 120 130 140
pF1KE4 AEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRL
:..:...:: .:. :.: ..:. ::.:.::
NP_001 RLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRL
120 130 140 150 160 170
150 160 170 180 190
pF1KE4 SLAHCDWVDGLALRGLADRCPALEELDLTACRQ-----LKDEAIVYLAQRRGA--GLRSL
.. : ... :. ... :: ::.::...: . : :: . :. .: ..: :
NP_001 EVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYL
180 190 200 210 220 230
200 210 220 230 240 250
pF1KE4 SLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHV
... . : ... .: .: .: :: : :.:. ..:.: :. :: .. : : :. :
NP_001 DMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFV
240 250 260 270 280 290
260 270 280 290 300
pF1KE4 AESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
.. .: .. :
NP_001 SDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYL
300 310 320 330 340 350
>>XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-repea (486 aa)
initn: 396 init1: 163 opt: 287 Z-score: 341.4 bits: 71.9 E(85289): 2.8e-12
Smith-Waterman score: 287; 30.6% identity (65.6% similar) in 160 aa overlap (116-268:183-342)
90 100 110 120 130 140
pF1KE4 AEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRL
:..:...:: .:. :.: ..:. ::.:.::
XP_016 RLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRL
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 SLAHCDWVDGLALRGLADRCPALEELDLTACRQ-----LKDEAIVYLAQRRGA--GLRSL
.. : ... :. ... :: ::.::...: . : :: . :. .: ..: :
XP_016 EVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYL
220 230 240 250 260 270
200 210 220 230 240 250
pF1KE4 SLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHV
... . : ... .: .: .: :: : :.:. ..:.: :. :: .. : : :. :
XP_016 DMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFV
280 290 300 310 320 330
260 270 280 290 300
pF1KE4 AESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
.. .: .. :
XP_016 SDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYL
340 350 360 370 380 390
>>NP_036436 (OMIM: 605656) F-box/LRR-repeat protein 7 is (491 aa)
initn: 396 init1: 163 opt: 287 Z-score: 341.3 bits: 71.9 E(85289): 2.8e-12
Smith-Waterman score: 287; 30.6% identity (65.6% similar) in 160 aa overlap (116-268:188-347)
90 100 110 120 130 140
pF1KE4 AEGLQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRL
:..:...:: .:. :.: ..:. ::.:.::
NP_036 RLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRL
160 170 180 190 200 210
150 160 170 180 190
pF1KE4 SLAHCDWVDGLALRGLADRCPALEELDLTACRQ-----LKDEAIVYLAQRRGA--GLRSL
.. : ... :. ... :: ::.::...: . : :: . :. .: ..: :
NP_036 EVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYL
220 230 240 250 260 270
200 210 220 230 240 250
pF1KE4 SLAVNANVGDAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHV
... . : ... .: .: .: :: : :.:. ..:.: :. :: .. : : :. :
NP_036 DMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFV
280 290 300 310 320 330
260 270 280 290 300
pF1KE4 AESSLSRLRKRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
.. .: .. :
NP_036 SDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYL
340 350 360 370 380 390
>>XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-repea (582 aa)
initn: 356 init1: 147 opt: 272 Z-score: 322.6 bits: 68.7 E(85289): 3.1e-11
Smith-Waterman score: 272; 25.0% identity (57.7% similar) in 272 aa overlap (2-269:302-564)
10 20
pF1KE4 MEPPMEPSGGEQEPGAVR--FLDLPWEDVLL
: : .: ..:: . .:: ..::
XP_011 TEAGGDAVRAGGTAPLSAQQQHECGDADCRESPENPCDCHREPPPETPDINQLP-PSILL
280 290 300 310 320 330
30 40 50 60 70 80
pF1KE4 PHVLNRVPL-RQLLRLQRVSRAFRSLVQLHLAGLRRFDAAQVGPQIPRAALARLLRDAEG
.... . : .. : . : . .:.: : . ...: .. :. : .. ...
XP_011 -KIFSNLSLDERCLSASLVCKYWRDLC-LDFQFWKQLDLSSR-QQVTDELLEKIASRSQN
340 350 360 370 380
90 100 110 120 130 140
pF1KE4 LQELALAPCHEWLSDEDLVPVLARNPQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLA
. :. .. :. .::. . . . : : . : ::: .. :.: :: ::.. ..
XP_011 IIEINISDCRS-MSDNGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVASHCPLLQKVHVG
390 400 410 420 430 440
150 160 170 180 190 200
pF1KE4 HCDWVDGLALRGLADRCPALEELDLTACRQLKDEAIVYLAQRRGA-GLRSLSLAVNANVG
. : . .:. :...: :... . : ...::... .: .: :. . . : :
XP_011 NQDKLTDEGLKQLGSKCRELKDIHFGQCYKISDEGMIVIA--KGCLKLQRIYMQENKLVT
450 460 470 480 490 500
210 220 230 240 250 260
pF1KE4 DAAVQELARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHVAESSLSRLR
: .:. .:..::::... . :: : : :: :.. : :: .:: .. . .. ..
XP_011 DQSVKAFAEHCPELQYVGFMGC-SVTSKGVIHLTKLRN-LSSLDLRHITELDNETVMEIV
510 520 530 540 550 560
270 280 290 300
pF1KE4 KRGVDIDVEPPLHQALVLLQDMAGFAPFVNLQV
::
XP_011 KRCKNLSSLNLCLNWIINDR
570 580
300 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:32:45 2016 done: Sun Nov 6 03:32:47 2016
Total Scan time: 8.350 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]