FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4052, 232 aa
  1>>>pF1KE4052 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6430+/-0.000739; mu= 9.9534+/- 0.045
 mean_var=123.7656+/-24.669, 0's: 0 Z-trim(113.1): 9  B-trim: 0 in 0/52
 Lambda= 0.115285
 statistics sampled from 13801 (13805) to 13801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS3345.1 RNF212 gene_id:285498|Hs108|chr4        ( 232) 1605 277.1 6.9e-75
CCDS46996.1 RNF212 gene_id:285498|Hs108|chr4       ( 297) 1318 229.4   2e-60
CCDS54704.1 RNF212 gene_id:285498|Hs108|chr4       ( 273)  612 112.0 4.1e-25


>>CCDS3345.1 RNF212 gene_id:285498|Hs108|chr4             (232 aa)
 initn: 1605 init1: 1605 opt: 1605  Z-score: 1457.9  bits: 277.1 E(32554): 6.9e-75
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
              190       200       210       220       230  

>>CCDS46996.1 RNF212 gene_id:285498|Hs108|chr4            (297 aa)
 initn: 1336 init1: 1318 opt: 1318  Z-score: 1198.5  bits: 229.4 E(32554): 2e-60
Smith-Waterman score: 1318; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL        
       :::::::::::.:                                               
CCDS46 SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS
              190       200       210       220       230       240

>>CCDS54704.1 RNF212 gene_id:285498|Hs108|chr4            (273 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 564.4  bits: 112.0 E(32554): 4.1e-25
Smith-Waterman score: 612; 96.5% identity (98.8% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
       :::::::::::::::::::::: :..                                  
CCDS54 DIQAFFMSIDSLCKKYSRETSQYLRLSRGCCRLKLCPATSSKEVPRGSTHGSQAAARDPQ
               70        80        90       100       110       120




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:44:01 2016 done: Mon Nov  7 17:44:01 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]