Result of FASTA (ccds) for
pFN21AE4050
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4050, 293 aa
1>>>pF1KE4050 293 - 293 aa - 293 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2844+/-0.00105; mu= 15.0371+/- 0.063
mean_var=58.1522+/-11.597, 0's: 0 Z-trim(102.2): 27 B-trim: 3 in 1/48
Lambda= 0.168187
statistics sampled from 6840 (6850) to 6840 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.21), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS3752.1 ELMOD2 gene_id:255520|Hs108|chr4 ( 293) 1990 491.4 3.3e-139
CCDS44724.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 326) 712 181.3 8.1e-46
CCDS76472.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 328) 712 181.3 8.2e-46
CCDS44723.1 ELMOD1 gene_id:55531|Hs108|chr11 ( 334) 712 181.3 8.3e-46
>>CCDS3752.1 ELMOD2 gene_id:255520|Hs108|chr4 (293 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 2612.6 bits: 491.4 E(32554): 3.3e-139
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE4 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRIFDTYVGAQRTHRIENSLTYSKNKVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRIFDTYVGAQRTHRIENSLTYSKNKVLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 KATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTMEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 SENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTMEH
190 200 210 220 230 240
250 260 270 280 290
pF1KE4 FHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKIKGLLLDCNVALTLKV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 FHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKIKGLLLDCNVALTLKV
250 260 270 280 290
>>CCDS44724.1 ELMOD1 gene_id:55531|Hs108|chr11 (326 aa)
initn: 1031 init1: 612 opt: 712 Z-score: 936.0 bits: 181.3 E(32554): 8.1e-46
Smith-Waterman score: 1015; 50.8% identity (76.2% similar) in 307 aa overlap (1-289:7-313)
10 20 30 40 50
pF1KE4 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTY
:.:.. .:: .:. .:...:..::.:::::: ..: ::.:: .::.::
CCDS44 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 SKNKVLQKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVE
::.:.:: .. : . ..: ..:::. :.:::. . .. : .. :::::.::..: :::
CCDS44 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 SVRKRPYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILG
..:.. ::::: ::::.:.:::..: :. :..:::::: :::::::::::::::::.::
CCDS44 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
130 140 150 160 170 180
180 190 200 210
pF1KE4 LINLVYFSENYTSEAHQILSRSNHPK-----------------LGYSYAIVGINLTEMAY
: :: ::.: .. :.:.:: : ::: .:::.::::::.:..::
CCDS44 LYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE4 SLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHE
.:: : ::: :.::..: ::. ::.: .:::..:: :::.::.: .:: :: ::::..
CCDS44 NLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRK
250 260 270 280 290 300
280 290
pF1KE4 KIKGLLLDCNVALTLKV
.: : . ..::
CCDS44 RIIKQLQNPDMALCPHFAASEGLINM
310 320
>>CCDS76472.1 ELMOD1 gene_id:55531|Hs108|chr11 (328 aa)
initn: 1031 init1: 612 opt: 712 Z-score: 936.0 bits: 181.3 E(32554): 8.2e-46
Smith-Waterman score: 999; 49.5% identity (74.3% similar) in 315 aa overlap (1-289:1-315)
10 20 30 40 50
pF1KE4 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTYSKNKVL
:.:.. .:: .:. .:...:..::.:::::: ..: ::.:: .::.:: ::.:.:
CCDS76 MLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 QKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRP
: .. : . ..: ..:::. :.:::. . .. : .. :::::.::..: :::..:..
CCDS76 QTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY
::::: ::::.:.:::..: :. :..:::::: :::::::::::::::::.::: :: :
CCDS76 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY
130 140 150 160 170 180
180 190 200 210
pF1KE4 FSENYTSEAHQILSRSNHPK-------------------------LGYSYAIVGINLTEM
:.: .. :.:.:: : ::: .:::.::::::.:..
CCDS76 FAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE4 AYSLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKF
::.:: : ::: :.::..: ::. ::.: .:::..:: :::.::.: .:: :: ::::
CCDS76 AYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKF
250 260 270 280 290 300
280 290
pF1KE4 HEKIKGLLLDCNVALTLKV
...: : . ..::
CCDS76 RKRIIKQLQNPDMALCPHFAASEGLINM
310 320
>>CCDS44723.1 ELMOD1 gene_id:55531|Hs108|chr11 (334 aa)
initn: 1031 init1: 612 opt: 712 Z-score: 935.8 bits: 181.3 E(32554): 8.3e-46
Smith-Waterman score: 999; 49.5% identity (74.3% similar) in 315 aa overlap (1-289:7-321)
10 20 30 40 50
pF1KE4 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTY
:.:.. .:: .:. .:...:..::.:::::: ..: ::.:: .::.::
CCDS44 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 SKNKVLQKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVE
::.:.:: .. : . ..: ..:::. :.:::. . .. : .. :::::.::..: :::
CCDS44 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 SVRKRPYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILG
..:.. ::::: ::::.:.:::..: :. :..:::::: :::::::::::::::::.::
CCDS44 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
130 140 150 160 170 180
180 190 200
pF1KE4 LINLVYFSENYTSEAHQILSRSNHPK-------------------------LGYSYAIVG
: :: ::.: .. :.:.:: : ::: .:::.::::
CCDS44 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE4 INLTEMAYSLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFN
::.:..::.:: : ::: :.::..: ::. ::.: .:::..:: :::.::.: .:: ::
CCDS44 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
250 260 270 280 290 300
270 280 290
pF1KE4 LYREKFHEKIKGLLLDCNVALTLKV
::::...: : . ..::
CCDS44 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
310 320 330
293 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:01:53 2016 done: Sun Nov 6 04:01:53 2016
Total Scan time: 1.910 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]