Result of FASTA (ccds) for
pFN21AE4040
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4040, 263 aa
1>>>pF1KE4040 263 - 263 aa - 263 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3597+/-0.000857; mu= 4.9606+/- 0.052
mean_var=242.9137+/-49.641, 0's: 0 Z-trim(116.3): 35 B-trim: 162 in 1/50
Lambda= 0.082290
statistics sampled from 16899 (16933) to 16899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.52), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 1793 224.6 5.5e-59
CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 1090 141.1 6.8e-34
CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 987 128.8 3.1e-30
CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 948 124.3 9.5e-29
CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 948 124.4 1e-28
>>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa)
initn: 1793 init1: 1793 opt: 1793 Z-score: 1172.4 bits: 224.6 E(32554): 5.5e-59
Smith-Waterman score: 1793; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)
10 20 30 40 50 60
pF1KE4 MAELQLDPAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAELQLDPAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 PPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 GPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNN
190 200 210 220 230 240
250 260
pF1KE4 STNGIVIEPSEKAKILQERGSRM
:::::::::::::::::::::::
CCDS32 STNGIVIEPSEKAKILQERGSRM
250 260
>>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa)
initn: 962 init1: 925 opt: 1090 Z-score: 722.0 bits: 141.1 E(32554): 6.8e-34
Smith-Waterman score: 1090; 82.1% identity (94.9% similar) in 196 aa overlap (68-263:40-234)
40 50 60 70 80 90
pF1KE4 GPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSF
:....:::::::::::.:::::: :.::::
CCDS10 SPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSF
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE4 LCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEF
: ::: : ::.::::::::::::::::::::::.:::::::::.:.:.::::::::::::
CCDS10 LYRLC-QADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEF
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE4 YNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLISIG
:::.::..:::..::. ...::: ::::::::::::::::::::::::::::::::.:::
CCDS10 YNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIG
130 140 150 160 170 180
220 230 240 250 260
pF1KE4 SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM
::::::::::::::::::.::.:. : . ::::::::::::::::
CCDS10 SSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
190 200 210 220 230
>>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa)
initn: 968 init1: 794 opt: 987 Z-score: 656.3 bits: 128.8 E(32554): 3.1e-30
Smith-Waterman score: 987; 69.0% identity (86.6% similar) in 216 aa overlap (52-263:7-220)
30 40 50 60 70
pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN
:. .: : . :: ::: :: ..:::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN
10 20 30
80 90 100 110 120 130
pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH
:::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.:::
CCDS74 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL
:::.. :..::::::::::::::. :.:..:.:..... ..: : ::::::::::::::
CCDS74 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ
:::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.:.::
CCDS74 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQ
160 170 180 190 200 210
260
pF1KE4 ERGSRM
::.::
CCDS74 ARGTRM
220
>>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa)
initn: 951 init1: 733 opt: 948 Z-score: 629.6 bits: 124.3 E(32554): 9.5e-29
Smith-Waterman score: 948; 67.9% identity (85.8% similar) in 212 aa overlap (52-259:7-216)
30 40 50 60 70
pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN
:. .: : . :: ::: :: ..:::::
CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN
10 20 30
80 90 100 110 120 130
pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH
:::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.:::
CCDS13 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL
:::.. :..::::::::::::::. :.:..:.:..... ..: : ::::::::::::::
CCDS13 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ
:::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.: .
CCDS13 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTE
160 170 180 190 200 210
260
pF1KE4 ERGSRM
:.
CCDS13 EQLEEQQQQEEEVEEVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHP
220 230 240 250 260 270
>>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa)
initn: 929 init1: 733 opt: 948 Z-score: 629.2 bits: 124.4 E(32554): 1e-28
Smith-Waterman score: 948; 67.9% identity (85.8% similar) in 212 aa overlap (52-259:7-216)
30 40 50 60 70
pF1KE4 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN
:. .: : . :: ::: :: ..:::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN
10 20 30
80 90 100 110 120 130
pF1KE4 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH
:::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.:::
CCDS74 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE4 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL
:::.. :..::::::::::::::. :.:..:.:..... ..: : ::::::::::::::
CCDS74 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE4 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ
:::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.: .
CCDS74 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTE
160 170 180 190 200 210
260
pF1KE4 ERGSRM
:.
CCDS74 EQLEEQQQQEEEVEEVEVEQVQVEADAQEKAQSSQDPANLFSLPPLPPPPLPAGGSRPHP
220 230 240 250 260 270
263 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:34:52 2016 done: Sun Nov 6 01:34:52 2016
Total Scan time: 2.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]