Result of FASTA (omim) for
pFN21AE4022
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4022, 210 aa
1>>>pF1KE4022 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9822+/-0.000365; mu= 15.2856+/- 0.023
mean_var=63.9914+/-13.328, 0's: 0 Z-trim(113.1): 91 B-trim: 593 in 1/53
Lambda= 0.160330
statistics sampled from 22172 (22268) to 22172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.261), width: 16
Scan time: 5.190
The best scores are: opt bits E(85289)
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 582 143.5 8.9e-34
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 582 143.6 1.1e-33
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 582 143.7 1.4e-33
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 582 143.7 1.4e-33
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 582 143.7 1.4e-33
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 582 143.7 1.4e-33
XP_016885746 (OMIM: 610806) PREDICTED: TBC1 domain ( 549) 553 136.7 7e-32
NP_001001417 (OMIM: 610144) TBC1 domain family mem ( 549) 553 136.7 7e-32
NP_001278391 (OMIM: 610810) TBC1 domain family mem ( 549) 553 136.7 7e-32
NP_115634 (OMIM: 610809) TBC1 domain family member ( 549) 549 135.8 1.3e-31
XP_006722119 (OMIM: 610811) PREDICTED: TBC1 domain ( 527) 547 135.3 1.8e-31
NP_001116864 (OMIM: 610811) TBC1 domain family mem ( 549) 547 135.3 1.8e-31
XP_006722118 (OMIM: 610811) PREDICTED: TBC1 domain ( 549) 547 135.3 1.8e-31
XP_006721970 (OMIM: 610806) PREDICTED: TBC1 domain ( 527) 543 134.4 3.4e-31
NP_001001418 (OMIM: 610806) TBC1 domain family mem ( 549) 543 134.4 3.5e-31
NP_001116863 (OMIM: 607741) TBC1 domain family mem ( 549) 543 134.4 3.5e-31
XP_006722317 (OMIM: 610808) PREDICTED: TBC1 domain ( 549) 533 132.1 1.7e-30
NP_001278395 (OMIM: 610808) TBC1 domain family mem ( 549) 533 132.1 1.7e-30
XP_011545761 (OMIM: 610806) PREDICTED: TBC1 domain ( 559) 447 112.2 1.7e-24
XP_005276971 (OMIM: 610810) PREDICTED: TBC1 domain ( 610) 447 112.2 1.8e-24
XP_005258038 (OMIM: 610806) PREDICTED: TBC1 domain ( 610) 447 112.2 1.8e-24
XP_005258037 (OMIM: 610144) PREDICTED: TBC1 domain ( 610) 447 112.2 1.8e-24
XP_011523478 (OMIM: 610811) PREDICTED: TBC1 domain ( 390) 441 110.7 3.3e-24
XP_011523477 (OMIM: 610811) PREDICTED: TBC1 domain ( 559) 441 110.8 4.5e-24
XP_011523476 (OMIM: 610811) PREDICTED: TBC1 domain ( 588) 441 110.8 4.6e-24
XP_011523474 (OMIM: 610811) PREDICTED: TBC1 domain ( 610) 441 110.8 4.8e-24
XP_011523475 (OMIM: 610811) PREDICTED: TBC1 domain ( 610) 441 110.8 4.8e-24
XP_006721971 (OMIM: 610806) PREDICTED: TBC1 domain ( 390) 437 109.8 6.3e-24
XP_016880135 (OMIM: 610806) PREDICTED: TBC1 domain ( 559) 437 109.9 8.5e-24
XP_006721968 (OMIM: 610806) PREDICTED: TBC1 domain ( 588) 437 109.9 8.8e-24
XP_011523116 (OMIM: 610806) PREDICTED: TBC1 domain ( 610) 437 109.9 9.1e-24
XP_006721967 (OMIM: 610806) PREDICTED: TBC1 domain ( 610) 437 109.9 9.1e-24
XP_016872460 (OMIM: 605405) PREDICTED: USP6 N-term ( 846) 409 103.5 1e-21
XP_006717605 (OMIM: 605405) PREDICTED: USP6 N-term ( 856) 409 103.5 1.1e-21
XP_011518064 (OMIM: 605405) PREDICTED: USP6 N-term ( 856) 409 103.5 1.1e-21
NP_055503 (OMIM: 605405) USP6 N-terminal-like prot ( 828) 408 103.3 1.2e-21
NP_001073960 (OMIM: 605405) USP6 N-terminal-like p ( 845) 405 102.6 2e-21
XP_016872462 (OMIM: 605405) PREDICTED: USP6 N-term ( 851) 405 102.6 2e-21
NP_114143 (OMIM: 610020) TBC1 domain family member ( 508) 211 57.6 4.3e-08
NP_001191169 (OMIM: 610020) TBC1 domain family mem ( 515) 210 57.3 5.1e-08
XP_011544092 (OMIM: 613620) PREDICTED: TBC1 domain ( 536) 203 55.7 1.6e-07
NP_056342 (OMIM: 613620) TBC1 domain family member ( 808) 203 55.8 2.2e-07
XP_011543304 (OMIM: 610831) PREDICTED: carabin iso ( 313) 171 48.2 1.8e-05
>>XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin carbo (786 aa)
initn: 549 init1: 549 opt: 582 Z-score: 727.4 bits: 143.5 E(85289): 8.9e-34
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin carbo (1031 aa)
initn: 549 init1: 549 opt: 582 Z-score: 725.7 bits: 143.6 E(85289): 1.1e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin carbo (1384 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.9 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>NP_004496 (OMIM: 604334) ubiquitin carboxyl-terminal h (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
NP_004 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
NP_004 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
NP_004 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
NP_004 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin carbo (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_016 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_016 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_016 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_016 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin carbo (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>NP_001291213 (OMIM: 604334) ubiquitin carboxyl-termina (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
NP_001 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
NP_001 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
NP_001 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
NP_001 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin carbo (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin carbo (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
>>XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin carbo (1406 aa)
initn: 549 init1: 549 opt: 582 Z-score: 723.8 bits: 143.7 E(85289): 1.4e-33
Smith-Waterman score: 582; 49.5% identity (76.9% similar) in 182 aa overlap (1-182:1-181)
10 20 30 40 50 60
pF1KE4 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMALPRV
:.: :. :.: :: . .:.. ::..::::: : : : : . . . .::.:: :: :
XP_011 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI
.: :.:. :.: ::.::..::..: :. ..:: .:: : ::. .:: . :.::.:..:
XP_011 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE4 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
: .:::.:..:::.:::::. :: :.::: ::..:..: .:.:.::.:: ::.::: :
XP_011 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY
120 130 140 150 160 170
190 200 210
pF1KE4 NPVSIPGQRYSWYLCPYSQAWVSLGGVATS
::
XP_011 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSLPGFHSPNGGTVQGLQDQQE
180 190 200 210 220 230
210 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:07:05 2016 done: Sun Nov 6 03:07:05 2016
Total Scan time: 5.190 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]