FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4019, 201 aa 1>>>pF1KE4019 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4158+/-0.00103; mu= 12.7371+/- 0.062 mean_var=58.2559+/-11.409, 0's: 0 Z-trim(102.2): 26 B-trim: 7 in 1/50 Lambda= 0.168037 statistics sampled from 6809 (6827) to 6809 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.21), width: 16 Scan time: 1.680 The best scores are: opt bits E(32554) CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 ( 201) 1291 321.3 2.5e-88 CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 ( 224) 407 107.0 8.9e-24 CCDS10310.1 TMED3 gene_id:23423|Hs108|chr15 ( 217) 350 93.2 1.3e-19 CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 404) 323 86.7 2.1e-17 CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 188) 309 83.2 1.1e-16 CCDS4428.1 TMED9 gene_id:54732|Hs108|chr5 ( 235) 272 74.3 6.6e-14 CCDS5493.1 TMED4 gene_id:222068|Hs108|chr7 ( 227) 253 69.7 1.6e-12 CCDS73768.1 TMED3 gene_id:23423|Hs108|chr15 ( 155) 242 67.0 7e-12 CCDS81914.1 TMED3 gene_id:23423|Hs108|chr15 ( 173) 242 67.0 7.7e-12 CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 ( 219) 232 64.6 5.2e-11 >>CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 (201 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1699.3 bits: 321.3 E(32554): 2.5e-88 Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 130 140 150 160 170 180 190 200 pF1KE4 VAMTLGQIYYLKRFFEVRRVV ::::::::::::::::::::: CCDS92 VAMTLGQIYYLKRFFEVRRVV 190 200 >>CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 (224 aa) initn: 400 init1: 279 opt: 407 Z-score: 540.3 bits: 107.0 E(32554): 8.9e-24 Smith-Waterman score: 407; 35.2% identity (65.8% similar) in 193 aa overlap (8-199:24-216) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMG :.::. . .: . .:..::.: ...::: CCDS41 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPK : :.: :: :.: .. ::.: .:: ... ..::.: .:::::::::..::.: : CCDS41 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 IVMFTIDIGEAPKGQDMETEAHQ-NKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIND :.: ...:: : :... ...: . :. .: : ....:: :. . CCDS41 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 170 180 190 200 pF1KE4 NTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV . :.::. :: :::.:.....::.. :: :: .: CCDS41 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS 190 200 210 220 >>CCDS10310.1 TMED3 gene_id:23423|Hs108|chr15 (217 aa) initn: 330 init1: 233 opt: 350 Z-score: 465.9 bits: 93.2 E(32554): 1.3e-19 Smith-Waterman score: 350; 32.4% identity (66.5% similar) in 176 aa overlap (28-201:36-211) 10 20 30 40 50 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDI .:..:: :.: .:.:..: ..: :: :. CCDS10 PRSASVLLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 DVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIG-EAP : . :... ::. ... ..:. :.. :.:.:::::..::.. : :.: ...: : : CCDS10 DCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 KGQDMETEAHQ-NKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF :: ... ...: . :. .: : ....:: :: .. :::: :: CCDS10 ILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVG 130 140 150 160 170 180 180 190 200 pF1KE4 EALVLVAMTLGQIYYLKRFFEVRRVV :...: .....:. :: :: .: . CCDS10 ETIALFVVSFSQVLLLKSFFTEKRPISRAVHS 190 200 210 >>CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 (404 aa) initn: 279 init1: 279 opt: 323 Z-score: 426.1 bits: 86.7 E(32554): 2.1e-17 Smith-Waterman score: 323; 33.7% identity (63.9% similar) in 166 aa overlap (8-172:24-189) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMG :.::. . .: . .:..::.: ...::: CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPK : :.: :: :.: .. ::.: .:: ... ..::.: .:::::::::..::.: : CCDS54 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 IVMFTIDIGEAPKGQDMETEAHQ-NKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIND :.: ...:: : :... ...: . :. .: : ....:: :. . CCDS54 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 170 180 190 200 pF1KE4 NTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV . :.::. : CCDS54 DLNTRVAYWHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEE 190 200 210 220 230 240 >>CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 (188 aa) initn: 307 init1: 279 opt: 309 Z-score: 413.2 bits: 83.2 E(32554): 1.1e-16 Smith-Waterman score: 309; 33.7% identity (63.8% similar) in 163 aa overlap (8-169:24-186) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMG :.::. . .: . .:..::.: ...::: CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPK : :.: :: :.: .. ::.: .:: ... ..::.: .:::::::::..::.: : CCDS54 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 IVMFTIDIGEAPKGQDMETEAHQ-NKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIND :.: ...:: : :... ...: . :. .: : ....:: :. . CCDS54 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 170 180 190 200 pF1KE4 NTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV . :.:: CCDS54 DLNTRVAY >>CCDS4428.1 TMED9 gene_id:54732|Hs108|chr5 (235 aa) initn: 175 init1: 157 opt: 272 Z-score: 363.1 bits: 74.3 E(32554): 6.6e-14 Smith-Waterman score: 281; 28.3% identity (61.8% similar) in 212 aa overlap (9-201:25-235) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLATV-SGYFVSIDAHAEECFFERVTSGT-- .::. ::: :. . : ..::.:.. . : CCDS44 MAVELGVLLVRPRPGTGLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMV 10 20 30 40 50 60 50 60 70 80 90 pF1KE4 ----------KMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYK :. .. : : : . ::. :..: : . : :..::..: : .. CCDS44 IGNYRTQLYDKQREEYQPATPG-LGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQ 70 80 90 100 110 100 110 120 130 140 pF1KE4 FCF---SNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM---INELAVAMTAVK .:. :...: .. .. .:: . ...:. : ..:: :. . .:. . .. CCDS44 ICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQ 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE4 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV .::.:.. ::. : ...::.::. ::....:.:::. . :. .:: :::....: CCDS44 KEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 180 190 200 210 220 230 >>CCDS5493.1 TMED4 gene_id:222068|Hs108|chr7 (227 aa) initn: 283 init1: 142 opt: 253 Z-score: 338.5 bits: 69.7 E(32554): 1.6e-12 Smith-Waterman score: 276; 27.4% identity (59.9% similar) in 212 aa overlap (9-201:17-227) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLAT-VSGYFVSIDAHAEECFFERVTSGT---------- .:: :: :: ..: . : ..::.:.. . : CCDS54 MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 10 20 30 40 50 60 50 60 70 80 90 pF1KE4 --KMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SN :. .: . : : . ::. ::.: . . . : :..::..: : ...:. :. CCDS54 WDKQKEVFLPSTPG-LGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNST 70 80 90 100 110 100 110 120 130 140 150 pF1KE4 RMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEV ::. .. . .:: . ..... : ..:: :. .: . ...::.:.. CCDS54 RMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRY 120 130 140 150 160 170 160 170 180 190 200 pF1KE4 RERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV ::. : ...::.::. ::. ....:. . :. .:: :::....: CCDS54 REERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 180 190 200 210 220 >>CCDS73768.1 TMED3 gene_id:23423|Hs108|chr15 (155 aa) initn: 233 init1: 233 opt: 242 Z-score: 326.8 bits: 67.0 E(32554): 7e-12 Smith-Waterman score: 242; 36.0% identity (75.3% similar) in 89 aa overlap (28-116:36-124) 10 20 30 40 50 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDI .:..:: :.: .:.:..: ..: :: :. CCDS73 PRSASVLLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 DVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPK : . :... ::. ... ..:. :.. :.:.:::::..::.. : :.: ...:. : CCDS73 DCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 GQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEA CCDS73 ILPDMGNRVTALTQGPSASPTPTPPLRVPV 130 140 150 >>CCDS81914.1 TMED3 gene_id:23423|Hs108|chr15 (173 aa) initn: 233 init1: 233 opt: 242 Z-score: 326.0 bits: 67.0 E(32554): 7.7e-12 Smith-Waterman score: 242; 36.0% identity (75.3% similar) in 89 aa overlap (28-116:36-124) 10 20 30 40 50 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDI .:..:: :.: .:.:..: ..: :: :. CCDS81 PRSASVLLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 DVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPK : . :... ::. ... ..:. :.. :.:.:::::..::.. : :.: ...:. : CCDS81 DCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 GQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEA CCDS81 ILPDMGNRVTALTQRFRGAYWKEVDKMVDYMQPGGTPATEGLGRLAPS 130 140 150 160 170 >>CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 (219 aa) initn: 195 init1: 153 opt: 232 Z-score: 311.2 bits: 64.6 E(32554): 5.2e-11 Smith-Waterman score: 232; 22.9% identity (61.2% similar) in 201 aa overlap (7-201:20-218) 10 20 30 40 pF1KE4 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIF :: ::. :. . .. . :... .:. :.. . . . CCDS98 MSGLSGPPARRGPFPLALLLLFLLGPRLVLAISFHLPINSR--KCLREEIHKDLLVTGAY 10 20 30 40 50 50 60 70 80 90 100 pF1KE4 EVAE--GGFLDIDVEITGPDNKG--IYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTP :... :: . .. :. : .:. . ..::..:... .. :: .. . : CCDS98 EISDQSGGAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIP 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 -KIVMFTIDIG-EAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAI ..:.. . : :: . ... . . :: . .: .. .. ::. ::. : CCDS98 DQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDT 120 130 140 150 160 170 170 180 190 200 pF1KE4 NDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV :..::.::. .:.: . :.... :..::.:::...... CCDS98 NESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 180 190 200 210 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:21:51 2016 done: Sun Nov 6 04:21:52 2016 Total Scan time: 1.680 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]