FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4017, 197 aa
  1>>>pF1KE4017 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7175+/-0.000636; mu= 16.8983+/- 0.039
 mean_var=62.4421+/-12.591, 0's: 0 Z-trim(112.0): 40  B-trim: 898 in 2/48
 Lambda= 0.162306
 statistics sampled from 12755 (12800) to 12755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.393), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS45813.1 ARL16 gene_id:339231|Hs108|chr17       ( 197) 1290 309.7 7.5e-85
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  266 69.9 1.1e-12


>>CCDS45813.1 ARL16 gene_id:339231|Hs108|chr17            (197 aa)
 initn: 1290 init1: 1290 opt: 1290  Z-score: 1636.8  bits: 309.7 E(32554): 7.5e-85
Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)

               10        20        30        40        50        60
pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 TRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAREGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAREGT
              130       140       150       160       170       180

              190       
pF1KE4 GLAGVLAWLQATHRAND
       :::::::::::::::::
CCDS45 GLAGVLAWLQATHRAND
              190       

>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12                (181 aa)
 initn: 215 init1:  81 opt: 266  Z-score: 341.5  bits: 69.9 E(32554): 1.1e-12
Smith-Waterman score: 266; 30.7% identity (58.1% similar) in 179 aa overlap (20-195:14-179)

               10        20        30        40        50        60
pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP
                          :...   :.::  :.::: .. :::          .::   
CCDS44       MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQ----------VGEVVT
                     10        20        30                  40    

               70         80          90       100       110       
pF1KE4 TRPTVGTNLTDIVAQR-KITIRELGG--CMGPIWSSYYGNCRSLLFVMDASDPTQLSASC
       : ::.: :.  .. .  :. . .:::   . : :  ::.:  ....:.:. :  ... : 
CCDS44 TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK
           50        60        70        80        90       100    

       120       130       140       150       160       170       
pF1KE4 VQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAR
        .:...:  :.: .: .... :: :.   :.. :: . . :: .     : . :   :: 
CCDS44 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT---SAT
          110       120       130       140       150          160 

       180       190       
pF1KE4 EGTGLAGVLAWLQATHRAND
       .::::  .. ::  : ..  
CCDS44 KGTGLDEAMEWLVETLKSRQ
             170       180 




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:33:21 2016 done: Sun Nov  6 03:33:21 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]