FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4016, 195 aa
  1>>>pF1KE4016 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2576+/-0.000927; mu= 13.7304+/- 0.056
 mean_var=77.9207+/-15.020, 0's: 0 Z-trim(106.3): 85  B-trim: 5 in 1/50
 Lambda= 0.145294
 statistics sampled from 8824 (8916) to 8824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS10073.1 CHP1 gene_id:11261|Hs108|chr15         ( 195) 1261 273.6 5.6e-74
CCDS10617.1 CHP2 gene_id:63928|Hs108|chr16         ( 196)  806 178.2 2.9e-45
CCDS46310.1 PPP3R1 gene_id:5534|Hs108|chr2         ( 170)  289 69.8 1.1e-12


>>CCDS10073.1 CHP1 gene_id:11261|Hs108|chr15              (195 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 1441.7  bits: 273.6 E(32554): 5.6e-74
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE4 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
              130       140       150       160       170       180

              190     
pF1KE4 EKVDVEQKMSIRFLH
       :::::::::::::::
CCDS10 EKVDVEQKMSIRFLH
              190     

>>CCDS10617.1 CHP2 gene_id:63928|Hs108|chr16              (196 aa)
 initn: 796 init1: 454 opt: 806  Z-score: 926.2  bits: 178.2 E(32554): 2.9e-45
Smith-Waterman score: 806; 61.0% identity (87.2% similar) in 195 aa overlap (1-194:1-195)

               10        20        30        40        50        60
pF1KE4 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
       ::::.:      . . :..:::::.... ::. :: .::....: ::: :.:.:  ::.:
CCDS10 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KE4 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNE-KSKDVNGPEPLNSRSNKLHFAF
       :::::::..:::.: ..:.: ::.:.::::::.::.. ...: . ::::::: ::::.::
CCDS10 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE4 RLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV
       .:::::.: :::: :.:::::.::::....::: .:::::.::::.:::.:.::.::.: 
CCDS10 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
              130       140       150       160       170       180

     180       190     
pF1KE4 LEKVDVEQKMSIRFLH
       :::.:::::::::.: 
CCDS10 LEKMDVEQKMSIRILK
              190      

>>CCDS46310.1 PPP3R1 gene_id:5534|Hs108|chr2              (170 aa)
 initn: 436 init1: 287 opt: 289  Z-score: 341.3  bits: 69.8 E(32554): 1.1e-12
Smith-Waterman score: 431; 43.2% identity (69.8% similar) in 169 aa overlap (23-191:15-168)

               10        20        30        40        50        60
pF1KE4 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
                             :. ..: :: .:: .::  ..:.:: :.:. .:::  :
CCDS46         MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQN
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KE4 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR
       :: .:.:. :  .:. .:.:. :.. ...:    :.:.               ::.::::
CCDS46 PLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ---------------KLRFAFR
             60        70        80        90                      

              130       140       150       160       170       180
pF1KE4 LYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
       .::.:::  ::  ::.:::.:::: :..: :: .:.:.:: .::.:::. ::: ::  :.
CCDS46 IYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV
       100       110       120       130       140       150       

              190     
pF1KE4 EKVDVEQKMSIRFLH
         .:...:: .    
CCDS46 GGLDIHKKMVVDV  
       160       170  




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:21:21 2016 done: Sun Nov  6 04:21:22 2016
 Total Scan time:  2.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]