FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4015, 193 aa
  1>>>pF1KE4015 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5162+/-0.00107; mu= 2.7837+/- 0.062
 mean_var=218.2127+/-46.976, 0's: 0 Z-trim(110.1): 846  B-trim: 142 in 1/49
 Lambda= 0.086823
 statistics sampled from 10378 (11357) to 10378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS44896.1 ZNF740 gene_id:283337|Hs108|chr12      ( 193) 1329 178.7 1.9e-45
CCDS3031.1 ZNF148 gene_id:7707|Hs108|chr3          ( 794)  460 70.6 2.9e-12


>>CCDS44896.1 ZNF740 gene_id:283337|Hs108|chr12           (193 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 929.2  bits: 178.7 E(32554): 1.9e-45
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE4 MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KSRSRKDDDSLSEASHSKKTVKKVVVVEQNGSFQVKIPKNFVCEHCFGAFRSSYHLKRHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KSRSRKDDDSLSEASHSKKTVKKVVVVEQNGSFQVKIPKNFVCEHCFGAFRSSYHLKRHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LIHTGEKPFECDICDMRFIQKYHLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LIHTGEKPFECDICDMRFIQKYHLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQ
              130       140       150       160       170       180

              190   
pF1KE4 GCQSKTSDGQFSL
       :::::::::::::
CCDS44 GCQSKTSDGQFSL
              190   

>>CCDS3031.1 ZNF148 gene_id:7707|Hs108|chr3               (794 aa)
 initn: 958 init1: 420 opt: 460  Z-score: 333.8  bits: 70.6 E(32554): 2.9e-12
Smith-Waterman score: 496; 46.8% identity (70.1% similar) in 154 aa overlap (60-185:130-283)

      30        40        50        60        70        80         
pF1KE4 QIASKQAENGERAGSPDVLRCSSQGHRKDSDKSRSRKDDDSLSEASHSKKTVKKVVVVEQ
                                     ::.. :.  :  .. ......  :......
CCDS30 LPQGLQYALNVPISVKQEITFTDVSEQLMRDKKQIREPVDLQKKKKRKQRSPAKILTINE
     100       110       120       130       140       150         

      90       100       110       120       130       140         
pF1KE4 NGSFQVKIPKNFVCEHCFGAFRSSYHLKRHILIHTGEKPFECDICDMRFIQKY-------
       .::. .: ::. ::::: .:::..:::.::..::::::::.:. :::::::::       
CCDS30 DGSLGLKTPKSHVCEHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQKYLLQRHEK
     160       170       180       190       200       210         

                                 150       160       170       180 
pF1KE4 ---------------------HLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQG
                            :.:::::.:::::::::: : : ::::::.:.:::::. 
CCDS30 IHTGEKPFRCDECGMRFIQKYHMERHKRTHSGEKPYQCEYCLQYFSRTDRVLKHKRMCHE
     220       230       240       250       260       270         

             190                                                   
pF1KE4 CQSKTSDGQFSL                                                
        ..:                                                        
CCDS30 NHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTEKKSSGMDKESALDKSDLK
     280       290       300       310       320       330         




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:22:25 2016 done: Sun Nov  6 04:22:26 2016
 Total Scan time:  2.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]