FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4013, 188 aa
  1>>>pF1KE4013 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1720+/-0.000291; mu= 13.2105+/- 0.018
 mean_var=63.2863+/-13.088, 0's: 0 Z-trim(118.3): 43  B-trim: 932 in 2/53
 Lambda= 0.161220
 statistics sampled from 30986 (31040) to 30986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.364), width:  16
 Scan time:  5.980

The best scores are:                                      opt bits E(85289)
NP_777559 (OMIM: 609105) F-box only protein 36 [Ho ( 188) 1270 303.4 1.4e-82
XP_005246374 (OMIM: 609105) PREDICTED: F-box only  ( 163) 1051 252.4 2.6e-67


>>NP_777559 (OMIM: 609105) F-box only protein 36 [Homo s  (188 aa)
 initn: 1270 init1: 1270 opt: 1270  Z-score: 1603.7  bits: 303.4 E(85289): 1.4e-82
Smith-Waterman score: 1270; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE4 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY
              130       140       150       160       170       180

               
pF1KE4 GNLREKQP
       ::::::::
NP_777 GNLREKQP
               

>>XP_005246374 (OMIM: 609105) PREDICTED: F-box only prot  (163 aa)
 initn: 1051 init1: 1051 opt: 1051  Z-score: 1329.3  bits: 252.4 E(85289): 2.6e-67
Smith-Waterman score: 1051; 99.4% identity (100.0% similar) in 157 aa overlap (32-188:7-163)

              10        20        30        40        50        60 
pF1KE4 ASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHEDF
                                     .:::::::::::::::::::::::::::::
XP_005                         MFQGLYEVIFRWWKISLRSEYRSTKPGEAKETHEDF
                                       10        20        30      

              70        80        90       100       110       120 
pF1KE4 LENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTS
         40        50        60        70        80        90      

             130       140       150       160       170       180 
pF1KE4 HRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYG
        100       110       120       130       140       150      

              
pF1KE4 NLREKQP
       :::::::
XP_005 NLREKQP
        160   




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:23:40 2016 done: Sun Nov  6 04:23:40 2016
 Total Scan time:  5.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]