Result of FASTA (ccds) for
pFN21AE4011
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4011, 177 aa
1>>>pF1KE4011 177 - 177 aa - 177 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4126+/-0.000704; mu= 12.8089+/- 0.043
mean_var=74.6620+/-15.197, 0's: 0 Z-trim(111.3): 47 B-trim: 414 in 1/49
Lambda= 0.148431
statistics sampled from 12216 (12266) to 12216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.377), width: 16
Scan time: 1.940
The best scores are: opt bits E(32554)
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 1230 271.8 1.5e-73
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 1230 271.8 1.5e-73
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 580 132.5 7.3e-32
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 580 132.5 7.3e-32
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 578 132.0 9.3e-32
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 579 132.4 1.2e-31
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 569 130.2 4.7e-31
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 569 130.2 4.7e-31
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 435 101.6 2.7e-22
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 432 100.9 4.3e-22
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 399 93.9 5.7e-20
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 396 93.2 8.9e-20
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 361 85.7 1.6e-17
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 345 82.3 1.7e-16
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 300 73.0 3.3e-13
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 300 73.0 3.5e-13
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 300 73.0 3.5e-13
>>CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 (177 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1433.9 bits: 271.8 E(32554): 1.5e-73
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
130 140 150 160 170
>>CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 (177 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1433.9 bits: 271.8 E(32554): 1.5e-73
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
130 140 150 160 170
>>CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 (95 aa)
initn: 580 init1: 580 opt: 580 Z-score: 685.5 bits: 132.5 E(32554): 7.3e-32
Smith-Waterman score: 580; 94.7% identity (97.9% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::.:.: . :
CCDS82 NTFAVWDVGSHFKIRPLWQHFFQNTKAAHSQSLTS
70 80 90
130 140 150 160 170
pF1KE4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
>>CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 (95 aa)
initn: 580 init1: 580 opt: 580 Z-score: 685.5 bits: 132.5 E(32554): 7.3e-32
Smith-Waterman score: 580; 94.7% identity (97.9% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::.:.: . :
CCDS82 NTFAVWDVGSHFKIRPLWQHFFQNTKAAHSQSLTS
70 80 90
130 140 150 160 170
pF1KE4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
>>CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 (88 aa)
initn: 578 init1: 578 opt: 578 Z-score: 683.7 bits: 132.0 E(32554): 9.3e-32
Smith-Waterman score: 578; 98.9% identity (100.0% similar) in 88 aa overlap (1-88:1-88)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::::::::::::::::::::::::::.
CCDS74 NTFAVWDVGSHFKIRPLWQHFFQNTKGS
70 80
>>CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 (141 aa)
initn: 579 init1: 579 opt: 579 Z-score: 681.9 bits: 132.4 E(32554): 1.2e-31
Smith-Waterman score: 579; 97.8% identity (98.9% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::::::::::::::::::::::::::. :
CCDS74 NTFAVWDVGSHFKIRPLWQHFFQNTKGSCSIDQAGVQWRDLGSLQRPLPKLRFVSHTSPH
70 80 90 100 110 120
>>CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 (125 aa)
initn: 569 init1: 569 opt: 569 Z-score: 671.1 bits: 130.2 E(32554): 4.7e-31
Smith-Waterman score: 569; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::
CCDS45 NTFAVWDVGSHFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPS
70 80 90 100 110 120
>>CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 (125 aa)
initn: 569 init1: 569 opt: 569 Z-score: 671.1 bits: 130.2 E(32554): 4.7e-31
Smith-Waterman score: 569; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
::::::::::::::::::::::::::
CCDS54 NTFAVWDVGSHFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPS
70 80 90 100 110 120
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 452 init1: 435 opt: 435 Z-score: 513.7 bits: 101.6 E(32554): 2.7e-22
Smith-Waterman score: 435; 72.4% identity (93.1% similar) in 87 aa overlap (1-87:1-87)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::: .:::.:.:::.::::...::.:::::::::::::: : ..::.:: ::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
.:.:::::.. ::::::.:.::::.:
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 449 init1: 432 opt: 432 Z-score: 510.2 bits: 100.9 E(32554): 4.3e-22
Smith-Waterman score: 432; 72.4% identity (93.1% similar) in 87 aa overlap (1-87:1-87)
10 20 30 40 50 60
pF1KE4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::: .:.:::.:::.::::...::.:::::::::::::: : ..::.:: ::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
.:.:::::.. ::::::.:.::::.:
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
177 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:24:15 2016 done: Sun Nov 6 04:24:16 2016
Total Scan time: 1.940 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]