FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4010, 163 aa
  1>>>pF1KE4010 163 - 163 aa - 163 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8205+/-0.000382; mu= 14.5779+/- 0.024
 mean_var=55.1260+/-10.832, 0's: 0 Z-trim(111.6): 31  B-trim: 0 in 0/53
 Lambda= 0.172741
 statistics sampled from 20228 (20234) to 20228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.237), width:  16
 Scan time:  5.020

The best scores are:                                      opt bits E(85289)
NP_036238 (OMIM: 615407,615434) ADP-ribosylation f ( 163) 1047 268.8 2.8e-72
XP_011521279 (OMIM: 615407,615434) PREDICTED: ADP- ( 131)  851 219.9 1.2e-57


>>NP_036238 (OMIM: 615407,615434) ADP-ribosylation facto  (163 aa)
 initn: 1047 init1: 1047 opt: 1047  Z-score: 1418.7  bits: 268.8 E(85289): 2.8e-72
Smith-Waterman score: 1047; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE4 MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLA
               70        80        90       100       110       120

              130       140       150       160   
pF1KE4 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
       :::::::::::::::::::::::::::::::::::::::::::
NP_036 FKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
              130       140       150       160   

>>XP_011521279 (OMIM: 615407,615434) PREDICTED: ADP-ribo  (131 aa)
 initn: 851 init1: 851 opt: 851  Z-score: 1156.1  bits: 219.9 E(85289): 1.2e-57
Smith-Waterman score: 851; 100.0% identity (100.0% similar) in 131 aa overlap (33-163:1-131)

             10        20        30        40        50        60  
pF1KE4 ALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIY
                                     ::::::::::::::::::::::::::::::
XP_011                               MDDEFQLLQRNFMDKYYLEFEDTEENKLIY
                                             10        20        30

             70        80        90       100       110       120  
pF1KE4 TPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFK
               40        50        60        70        80        90

            130       140       150       160   
pF1KE4 EMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
       :::::::::::::::::::::::::::::::::::::::::
XP_011 EMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH
              100       110       120       130 




163 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:24:58 2016 done: Sun Nov  6 04:24:59 2016
 Total Scan time:  5.020 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]