FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4007, 155 aa
  1>>>pF1KE4007 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5515+/-0.000756; mu= 11.9157+/- 0.045
 mean_var=99.9811+/-21.133, 0's: 0 Z-trim(111.6): 97  B-trim: 473 in 1/51
 Lambda= 0.128267
 statistics sampled from 12388 (12511) to 12388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8         ( 155) 1111 215.0 1.5e-56
CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20        ( 148)  566 114.1 3.4e-26
CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20        ( 169)  566 114.2 3.7e-26


>>CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8              (155 aa)
 initn: 1111 init1: 1111 opt: 1111  Z-score: 1128.6  bits: 215.0 E(32554): 1.5e-56
Smith-Waterman score: 1111; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KE4 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL
               70        80        90       100       110       120

              130       140       150     
pF1KE4 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV
       :::::::::::::::::::::::::::::::::::
CCDS60 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV
              130       140       150     

>>CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20             (148 aa)
 initn: 571 init1: 296 opt: 566  Z-score: 583.8  bits: 114.1 E(32554): 3.4e-26
Smith-Waterman score: 566; 67.3% identity (90.3% similar) in 113 aa overlap (25-137:12-122)

               10        20        30        40        50        60
pF1KE4 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI
                               :: :.::.::::::.:.:::.::::.:::.::::.:
CCDS13              MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLI
                            10        20        30        40       

               70        80        90       100       110       120
pF1KE4 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL
        .::.::..: :.::.:.::  .:.:.:. . ::::::::: .::::. ::.::::::::
CCDS13 -RLRHQAHKEFYAYKQVILKEKVKELNLH-ELCAVCLEDFKPRDELGICPCKHAFHRKCL
         50        60        70         80        90       100     

              130       140       150             
pF1KE4 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV        
       .:::::: :::.:: :.                          
CCDS13 IKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
         110       120       130       140        

>>CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20             (169 aa)
 initn: 571 init1: 296 opt: 566  Z-score: 583.1  bits: 114.2 E(32554): 3.7e-26
Smith-Waterman score: 566; 67.3% identity (90.3% similar) in 113 aa overlap (25-137:33-143)

                     10        20        30        40        50    
pF1KE4       MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLI
                                     :: :.::.::::::.:.:::.::::.:::.
CCDS46 NKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLL
             10        20        30        40        50        60  

           60        70        80        90       100       110    
pF1KE4 FCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHA
       ::::.: .::.::..: :.::.:.::  .:.:.:. . ::::::::: .::::. ::.::
CCDS46 FCCYLI-RLRHQAHKEFYAYKQVILKEKVKELNLH-ELCAVCLEDFKPRDELGICPCKHA
              70        80        90        100       110       120

          120       130       140       150             
pF1KE4 FHRKCLVKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV        
       ::::::.:::::: :::.:: :.                          
CCDS46 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
              130       140       150       160         




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:25:30 2016 done: Sun Nov  6 04:25:30 2016
 Total Scan time:  1.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]