Result of FASTA (ccds) for
pFN21AE3996
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3996, 234 aa
1>>>pF1KE3996 234 - 234 aa - 234 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0733+/-0.000706; mu= 11.0609+/- 0.043
mean_var=80.6575+/-16.186, 0's: 0 Z-trim(110.1): 59 B-trim: 0 in 0/53
Lambda= 0.142808
statistics sampled from 11305 (11364) to 11305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.349), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 1557 329.8 9.5e-91
CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 1548 328.0 4.1e-90
CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 1159 247.8 5e-66
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 359 83.0 1.9e-16
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 342 79.5 2.4e-15
CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 294 69.6 2.2e-12
>>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa)
initn: 1557 init1: 1557 opt: 1557 Z-score: 1742.7 bits: 329.8 E(32554): 9.5e-91
Smith-Waterman score: 1557; 99.1% identity (99.6% similar) in 234 aa overlap (1-234:1-234)
10 20 30 40 50 60
pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS12 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQDVL
190 200 210 220 230
>>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa)
initn: 1548 init1: 1548 opt: 1548 Z-score: 1731.4 bits: 328.0 E(32554): 4.1e-90
Smith-Waterman score: 1548; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQVLERLFQRG
190 200 210 220 230 240
CCDS46 FSVAASCGGGVDSSQFSEYVLCREERRPQPTPTAVRIKQEPLD
250 260 270 280
>>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa)
initn: 1159 init1: 1159 opt: 1159 Z-score: 1298.9 bits: 247.8 E(32554): 5e-66
Smith-Waterman score: 1159; 81.0% identity (94.1% similar) in 205 aa overlap (27-231:1-205)
10 20 30 40 50 60
pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI
::: .::::.::: :::: :::::::::::::
CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI
10 20 30
70 80 90 100 110 120
pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS
:::.::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.:::::
CCDS11 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER
:::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.::::::
CCDS11 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER
100 110 120 130 140 150
190 200 210 220 230
pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL
:.:::.:.:::::::: :::::::::::::.: ::::::::::::.:::::
CCDS11 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG
160 170 180 190 200 210
CCDS11 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD
220 230 240 250
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 374 init1: 227 opt: 359 Z-score: 408.6 bits: 83.0 E(32554): 1.9e-16
Smith-Waterman score: 359; 55.3% identity (83.0% similar) in 94 aa overlap (57-150:13-105)
30 40 50 60 70 80
pF1KE3 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLF
:: ..::.:.::.::.:::.:::: .. .:
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF
10 20 30 40
90 100 110 120 130 140
pF1KE3 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
.: : . : . .::::::: .:::::.:::::.: :: :::.:.:: .:: .::..:.
CCDS28 GGDFPTARDP-QGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPL
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE3 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
.. :
CCDS28 IQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFT
110 120 130 140 150 160
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 364 init1: 221 opt: 342 Z-score: 389.1 bits: 79.5 E(32554): 2.4e-15
Smith-Waterman score: 342; 45.8% identity (81.3% similar) in 107 aa overlap (57-163:4-109)
30 40 50 60 70 80
pF1KE3 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLF
:. ..::...::.::::::..::: .. .:
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
10 20 30
90 100 110 120 130 140
pF1KE3 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
.: : :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::.
CCDS31 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
.. :.. . : . ...
CCDS31 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
100 110 120 130 140 150
>>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa)
initn: 273 init1: 200 opt: 294 Z-score: 335.7 bits: 69.6 E(32554): 2.2e-12
Smith-Waterman score: 294; 42.9% identity (77.1% similar) in 105 aa overlap (60-163:37-140)
30 40 50 60 70 80
pF1KE3 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLFNGT
..::...: .. :::::::. . . ::
CCDS93 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK
10 20 30 40 50 60
90 100 110 120 130 140
pF1KE3 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE
.:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...:
CCDS93 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE
70 80 90 100 110 120
150 160 170 180 190 200
pF1KE3 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG
.. ::..:: :..
CCDS93 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE
130 140 150 160 170 180
234 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 08:08:56 2016 done: Sun Nov 6 08:08:56 2016
Total Scan time: 2.030 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]