FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3996, 234 aa 1>>>pF1KE3996 234 - 234 aa - 234 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0733+/-0.000706; mu= 11.0609+/- 0.043 mean_var=80.6575+/-16.186, 0's: 0 Z-trim(110.1): 59 B-trim: 0 in 0/53 Lambda= 0.142808 statistics sampled from 11305 (11364) to 11305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.349), width: 16 Scan time: 2.030 The best scores are: opt bits E(32554) CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 1557 329.8 9.5e-91 CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 1548 328.0 4.1e-90 CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 1159 247.8 5e-66 CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 359 83.0 1.9e-16 CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 342 79.5 2.4e-15 CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 294 69.6 2.2e-12 >>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa) initn: 1557 init1: 1557 opt: 1557 Z-score: 1742.7 bits: 329.8 E(32554): 9.5e-91 Smith-Waterman score: 1557; 99.1% identity (99.6% similar) in 234 aa overlap (1-234:1-234) 10 20 30 40 50 60 pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL ::::::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS12 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQDVL 190 200 210 220 230 >>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa) initn: 1548 init1: 1548 opt: 1548 Z-score: 1731.4 bits: 328.0 E(32554): 4.1e-90 Smith-Waterman score: 1548; 99.6% identity (100.0% similar) in 231 aa overlap (1-231:1-231) 10 20 30 40 50 60 pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DVGGHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQVLERLFQRG 190 200 210 220 230 240 CCDS46 FSVAASCGGGVDSSQFSEYVLCREERRPQPTPTAVRIKQEPLD 250 260 270 280 >>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa) initn: 1159 init1: 1159 opt: 1159 Z-score: 1298.9 bits: 247.8 E(32554): 5e-66 Smith-Waterman score: 1159; 81.0% identity (94.1% similar) in 205 aa overlap (27-231:1-205) 10 20 30 40 50 60 pF1KE3 MPHRKERPSGSSLHTHGSTGTAEGGNMSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHI ::: .::::.::: :::: ::::::::::::: CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHI 10 20 30 70 80 90 100 110 120 pF1KE3 DVGSHMYTSSLATLTKYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTS :::.::::::::::::::.:::.:::.::::::::::::::::::::..:::.:.::::: CCDS11 DVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 KLLLPDDFKDFSLLYEEARYYQLQPMVRELERWQQEQEQRRRSRACDCLVVRVTPDLGER :::.::::::..::::::.:.:::::. :.:::.:..: : :: :.::::::.:::::: CCDS11 KLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPCECLVVRVAPDLGER 100 110 120 130 140 150 190 200 210 220 230 pF1KE3 IALSGEKALIEEVFPETGDVMCNSVNAGWNQDPTHVIRFPLNGYCRLNSVQHVL :.:::.:.:::::::: :::::::::::::.: ::::::::::::.::::: CCDS11 ITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERLQQRG 160 170 180 190 200 210 CCDS11 FEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD 220 230 240 250 >>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa) initn: 374 init1: 227 opt: 359 Z-score: 408.6 bits: 83.0 E(32554): 1.9e-16 Smith-Waterman score: 359; 55.3% identity (83.0% similar) in 94 aa overlap (57-150:13-105) 30 40 50 60 70 80 pF1KE3 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLF :: ..::.:.::.::.:::.:::: .. .: CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF 10 20 30 40 90 100 110 120 130 140 pF1KE3 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM .: : . : . .::::::: .:::::.:::::.: :: :::.:.:: .:: .::..:. CCDS28 GGDFPTARDP-QGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPL 50 60 70 80 90 100 150 160 170 180 190 200 pF1KE3 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN .. : CCDS28 IQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFT 110 120 130 140 150 160 >>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa) initn: 364 init1: 221 opt: 342 Z-score: 389.1 bits: 79.5 E(32554): 2.4e-15 Smith-Waterman score: 342; 45.8% identity (81.3% similar) in 107 aa overlap (57-163:4-109) 30 40 50 60 70 80 pF1KE3 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLF :. ..::...::.::::::..::: .. .: CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF 10 20 30 90 100 110 120 130 140 pF1KE3 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM .: : :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::. CCDS31 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN .. :.. . : . ... CCDS31 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS 100 110 120 130 140 150 >>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa) initn: 273 init1: 200 opt: 294 Z-score: 335.7 bits: 69.6 E(32554): 2.2e-12 Smith-Waterman score: 294; 42.9% identity (77.1% similar) in 105 aa overlap (60-163:37-140) 30 40 50 60 70 80 pF1KE3 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGSHMYTSSLATLTKYPDSRISRLFNGT ..::...: .. :::::::. . . :: CCDS93 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK 10 20 30 40 50 60 90 100 110 120 130 140 pF1KE3 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE .:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...: CCDS93 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE 70 80 90 100 110 120 150 160 170 180 190 200 pF1KE3 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG .. ::..:: :.. CCDS93 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE 130 140 150 160 170 180 234 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:08:56 2016 done: Sun Nov 6 08:08:56 2016 Total Scan time: 2.030 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]